Variant report

Variant	rs16935360
Chromosome Location	chr8:69939189-69939190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:69779434..69781430-chr8:69938398..69940569,2	MCF-7	breast:
2	chr8:69763965..69768682-chr8:69936311..69940629,5	MCF-7	breast:
3	chr8:69936504..69939318-chr8:70021780..70023700,3	MCF-7	breast:
4	chr8:69938259..69942128-chr8:69942869..69947061,5	MCF-7	breast:
5	chr8:69843828..69845406-chr8:69938047..69940991,2	MCF-7	breast:
6	chr8:69765448..69769118-chr8:69936665..69941458,7	MCF-7	breast:
7	chr8:69762264..69763807-chr8:69938743..69941277,2	MCF-7	breast:
8	chr8:69937690..69940143-chr8:69983097..69986013,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction
ENSG00000238808	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10093389	0.81[ASN][1000 genomes]
rs10504435	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12545358	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12545420	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12549168	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12550286	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12550397	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12675555	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675576	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16935336	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16935363	0.81[ASN][1000 genomes]
rs1974974	0.81[ASN][1000 genomes]
rs4737935	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4737936	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55729603	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6990230	0.87[ASN][1000 genomes]
rs6999385	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999406	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683795	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73683796	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73683801	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819411	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7819425	0.88[EUR][1000 genomes]
rs7825661	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv982081	chr8:69929430-69943096	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69930200-69940800	Weak transcription	HSMM	muscle
2	chr8:69930800-69942800	Weak transcription	Osteobl	bone
3	chr8:69938400-69940000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:69938600-69942800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:69938800-69939800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:69938800-69940000	Weak transcription	NHEK	skin
7	chr8:69939000-69943600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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