Variant report

Variant	rs10094047
Chromosome Location	chr8:121749124-121749125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10086267	1.00[AFR][1000 genomes]
rs28627244	1.00[AFR][1000 genomes]
rs7006428	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016172	chr8:121679590-121929916	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv891422	chr8:121680857-121819478	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3351957	chr8:121749048-121749470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121731000-121757400	Weak transcription	Lung	lung
2	chr8:121739600-121750200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:121739600-121758000	Weak transcription	NHLF	lung
4	chr8:121742200-121753200	Weak transcription	Fetal Kidney	kidney
5	chr8:121742200-121754600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:121742200-121757200	Weak transcription	HSMM	muscle
7	chr8:121742400-121749800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:121742800-121750600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:121743800-121750600	Weak transcription	Fetal Intestine Large	intestine
10	chr8:121745200-121749400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr8:121745200-121761200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr8:121745400-121750200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:121745400-121761400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr8:121745400-121761600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:121745600-121761400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr8:121745800-121750200	Enhancers	Primary T cells from cord blood	blood
17	chr8:121745800-121751600	Weak transcription	HSMMtube	muscle
18	chr8:121745800-121761400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:121745800-121774200	Weak transcription	Fetal Stomach	stomach
20	chr8:121746800-121749200	Genic enhancers	HepG2	liver
21	chr8:121747600-121749200	Enhancers	Small Intestine	intestine
22	chr8:121747600-121755800	Weak transcription	Aorta	Aorta
23	chr8:121747800-121749200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
24	chr8:121747800-121757400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:121747800-121759600	Weak transcription	Fetal Thymus	thymus
26	chr8:121748000-121749800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:121748000-121750400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:121748000-121752800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:121748000-121756200	Weak transcription	Pancreas	Pancrea
30	chr8:121748000-121757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:121748200-121749200	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr8:121748200-121749200	Genic enhancers	Liver	Liver
33	chr8:121748200-121750600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr8:121748200-121751200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr8:121748200-121751600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:121748400-121749400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr8:121748400-121749400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr8:121748400-121749400	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr8:121748400-121751400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:121748400-121755000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr8:121748600-121749200	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr8:121748600-121749600	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr8:121748800-121749200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr8:121748800-121749200	Enhancers	Psoas Muscle	Psoas
45	chr8:121748800-121749400	Enhancers	Primary B cells from peripheral blood	blood
46	chr8:121748800-121749800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr8:121748800-121753200	Weak transcription	Thymus	Thymus
48	chr8:121749000-121749800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr8:121749000-121749800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr8:121749000-121752800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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