Variant report

Variant	rs10094119
Chromosome Location	chr8:89238315-89238316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10092380	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094254	0.94[ASN][1000 genomes]
rs10094255	0.94[ASN][1000 genomes]
rs11777424	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12682181	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251664	0.94[ASN][1000 genomes]
rs13254181	0.94[ASN][1000 genomes]
rs13259709	0.94[ASN][1000 genomes]
rs13282499	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16879968	0.94[ASN][1000 genomes]
rs16880086	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16880099	0.94[ASN][1000 genomes]
rs17666490	0.83[ASN][1000 genomes]
rs1949530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139481	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2337519	0.94[ASN][1000 genomes]
rs34409795	0.86[ASN][1000 genomes]
rs35474420	0.94[ASN][1000 genomes]
rs4514028	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4961082	0.94[ASN][1000 genomes]
rs6983817	0.94[ASN][1000 genomes]
rs7010876	0.81[AFR][1000 genomes]
rs7816422	0.94[ASN][1000 genomes]
rs7824367	0.94[ASN][1000 genomes]
rs7825130	0.94[ASN][1000 genomes]
rs7825629	0.94[ASN][1000 genomes]
rs7826477	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89230800-89238800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:89233600-89239400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:89236400-89238800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr8:89236800-89239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:89237000-89244200	Weak transcription	NH-A	brain
6	chr8:89237200-89239200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links