Variant report

Variant	rs16879968
Chromosome Location	chr8:89231793-89231794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10092380	0.94[ASN][1000 genomes]
rs10094119	0.94[ASN][1000 genomes]
rs10094254	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10094255	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12546847	0.85[EUR][1000 genomes]
rs12547891	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12548164	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12548802	0.82[AMR][1000 genomes]
rs12682181	0.94[ASN][1000 genomes]
rs13251664	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13254181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13259709	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13261150	0.83[EUR][1000 genomes]
rs1401861	0.84[AMR][1000 genomes]
rs1519934	0.81[AMR][1000 genomes]
rs16880086	0.94[ASN][1000 genomes]
rs16880099	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1879199	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1915013	0.88[AMR][1000 genomes]
rs1949530	0.94[ASN][1000 genomes]
rs2030346	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2337519	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28527305	0.85[EUR][1000 genomes]
rs28731145	0.81[EUR][1000 genomes]
rs34409795	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34914970	0.85[AMR][1000 genomes]
rs35474420	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4960952	0.88[AMR][1000 genomes]
rs4961080	0.80[AMR][1000 genomes]
rs4961082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6983817	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990910	0.81[EUR][1000 genomes]
rs7816422	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7824367	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7825130	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7825629	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7826477	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9643051	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89230000-89231800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:89230800-89232000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:89230800-89238800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:89231200-89232000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:89231400-89231800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:89231400-89231800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:89231600-89231800	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links