Variant report

Variant	rs4960952
Chromosome Location	chr8:89199583-89199584
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11986591	0.83[ASN][1000 genomes]
rs12546847	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12547891	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12548164	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12548802	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13254181	0.88[AMR][1000 genomes]
rs13257117	0.94[ASN][1000 genomes]
rs13261150	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13261974	0.93[ASN][1000 genomes]
rs13282499	0.85[ASN][1000 genomes]
rs1401862	0.94[ASN][1000 genomes]
rs1519934	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16879968	0.88[AMR][1000 genomes]
rs1879199	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1915013	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030346	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2139481	0.85[ASN][1000 genomes]
rs2139482	0.85[ASN][1000 genomes]
rs2176771	0.85[ASN][1000 genomes]
rs2337517	0.94[ASN][1000 genomes]
rs28527305	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28731145	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28907588	0.83[ASN][1000 genomes]
rs34409795	0.88[AMR][1000 genomes]
rs35474420	0.83[AMR][1000 genomes]
rs4961080	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4961082	0.88[AMR][1000 genomes]
rs6983817	0.91[AMR][1000 genomes]
rs6988189	0.85[ASN][1000 genomes]
rs6990910	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7001079	0.95[ASN][1000 genomes]
rs7823166	0.95[ASN][1000 genomes]
rs7825130	0.80[AMR][1000 genomes]
rs7825629	0.91[AMR][1000 genomes]
rs7826477	0.91[AMR][1000 genomes]
rs7835345	0.85[ASN][1000 genomes]
rs939278	0.83[AFR][1000 genomes]
rs9643051	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89160800-89217200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:89177200-89214400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:89177200-89216400	Weak transcription	Brain Germinal Matrix	brain
4	chr8:89178000-89205200	Weak transcription	Fetal Stomach	stomach
5	chr8:89190600-89202800	Weak transcription	NH-A	brain
6	chr8:89191800-89203000	Weak transcription	HUVEC	blood vessel
7	chr8:89195000-89219200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:89195800-89210600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:89196600-89214200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:89196800-89214800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:89198000-89203000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:89198200-89202200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:89198800-89207000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:89199400-89200200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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