Variant report

Variant	rs13257117
Chromosome Location	chr8:89212458-89212459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89212012..89214095-chr8:89216731..89219442,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11986591	0.82[ASN][1000 genomes]
rs12546847	0.93[ASN][1000 genomes]
rs12547891	0.92[ASN][1000 genomes]
rs12548164	0.92[ASN][1000 genomes]
rs13261150	0.92[ASN][1000 genomes]
rs13261974	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13282499	0.85[ASN][1000 genomes]
rs1401862	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1519934	0.80[ASN][1000 genomes]
rs1879199	0.94[ASN][1000 genomes]
rs1915013	0.94[ASN][1000 genomes]
rs2030346	0.96[ASN][1000 genomes]
rs2139481	0.85[ASN][1000 genomes]
rs2139482	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2176771	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2337517	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28527305	0.92[ASN][1000 genomes]
rs28731145	0.92[ASN][1000 genomes]
rs28907588	0.82[ASN][1000 genomes]
rs4960952	0.94[ASN][1000 genomes]
rs6988189	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6990910	0.92[ASN][1000 genomes]
rs7001079	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7823166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7835345	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9643051	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89160800-89217200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:89177200-89214400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:89177200-89216400	Weak transcription	Brain Germinal Matrix	brain
4	chr8:89195000-89219200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:89196600-89214200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:89196800-89214800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:89201200-89218000	Weak transcription	Fetal Lung	lung
8	chr8:89204000-89219600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:89204200-89217200	Weak transcription	NH-A	brain
10	chr8:89208000-89215800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:89208000-89217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:89210600-89212600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:89211000-89212600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:89211400-89214000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr8:89211600-89217000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:89211800-89214800	Enhancers	Fetal Intestine Large	intestine
17	chr8:89211800-89217200	Weak transcription	Fetal Brain Female	brain
18	chr8:89212200-89213600	Enhancers	Fetal Intestine Small	intestine
19	chr8:89212400-89212800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:89212400-89213000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:89212400-89217200	Weak transcription	Fetal Brain Male	brain

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