Variant report

Variant	rs13261974
Chromosome Location	chr8:89220059-89220060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11986591	0.86[ASN][1000 genomes]
rs12546847	0.96[ASN][1000 genomes]
rs12547891	0.91[ASN][1000 genomes]
rs12548164	0.96[ASN][1000 genomes]
rs13257117	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13261150	0.95[ASN][1000 genomes]
rs13282499	0.85[ASN][1000 genomes]
rs1401862	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1879199	0.93[ASN][1000 genomes]
rs1915013	0.93[ASN][1000 genomes]
rs2030346	0.95[ASN][1000 genomes]
rs2139481	0.85[ASN][1000 genomes]
rs2139482	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2176771	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2337517	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28527305	0.91[ASN][1000 genomes]
rs28731145	0.92[ASN][1000 genomes]
rs28907588	0.82[ASN][1000 genomes]
rs4960952	0.93[ASN][1000 genomes]
rs4961080	0.81[ASN][1000 genomes]
rs6988189	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6990910	0.95[ASN][1000 genomes]
rs7001079	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7823166	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7835345	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9643051	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv527243	chr8:89217541-89227970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89215200-89227600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:89217800-89222400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:89217800-89231400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:89218200-89222000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:89218200-89223800	Weak transcription	NH-A	brain
6	chr8:89218800-89224200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:89219400-89220200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:89219400-89220600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:89219600-89220600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:89219600-89220600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr8:89219800-89220200	Enhancers	Fetal Intestine Large	intestine
12	chr8:89220000-89220200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:89220000-89223600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:89220000-89227600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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