Variant report

Variant	rs939278
Chromosome Location	chr8:89217711-89217712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89212012..89214095-chr8:89216731..89219442,2	MCF-7	breast:
2	chr8:89208118..89210006-chr8:89216241..89218835,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1915013	0.84[AFR][1000 genomes]
rs28907898	1.00[EUR][1000 genomes]
rs4960952	0.83[AFR][1000 genomes]
rs5016164	0.82[AMR][1000 genomes]
rs57733012	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6469299	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7818066	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv527243	chr8:89217541-89227970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89195000-89219200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:89201200-89218000	Weak transcription	Fetal Lung	lung
3	chr8:89204000-89219600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:89214800-89219800	Weak transcription	Fetal Intestine Large	intestine
5	chr8:89215200-89219400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:89215200-89227600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:89215600-89219200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr8:89215800-89218200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:89215800-89218200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:89216200-89218800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:89216400-89217800	Enhancers	Brain Germinal Matrix	brain
12	chr8:89217000-89218000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:89217000-89218200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:89217000-89218200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr8:89217000-89218800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:89217000-89218800	Enhancers	Osteobl	bone
17	chr8:89217200-89217800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:89217200-89217800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr8:89217200-89217800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:89217200-89217800	Enhancers	Fetal Brain Male	brain
21	chr8:89217200-89217800	Enhancers	Fetal Kidney	kidney
22	chr8:89217200-89218000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr8:89217200-89218000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:89217200-89218000	Enhancers	Fetal Brain Female	brain
25	chr8:89217200-89218200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:89217200-89218200	Enhancers	NH-A	brain
27	chr8:89217400-89217800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr8:89217400-89217800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:89217400-89217800	Enhancers	Brain Angular Gyrus	brain
30	chr8:89217600-89217800	Enhancers	H9 Cell Line	embryonic stem cell
31	chr8:89217600-89218000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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