Variant report

Variant	rs7818066
Chromosome Location	chr8:89255620-89255621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89251063..89254156-chr8:89255310..89258377,3	MCF-7	breast:
2	chr8:89254721..89256810-chr8:89272471..89275447,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11984451	0.96[ASN][1000 genomes]
rs16880226	1.00[ASN][1000 genomes]
rs16880322	1.00[ASN][1000 genomes]
rs16880333	1.00[ASN][1000 genomes]
rs16880925	0.90[EUR][1000 genomes]
rs28904573	0.90[EUR][1000 genomes]
rs28904598	1.00[ASN][1000 genomes]
rs34725691	0.87[ASN][1000 genomes]
rs5016164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469299	0.83[AFR][1000 genomes]
rs66532949	0.82[AMR][1000 genomes]
rs6983817	0.82[AFR][1000 genomes]
rs6994019	0.85[ASN][1000 genomes]
rs7010876	0.85[ASN][1000 genomes]
rs73692226	0.85[EUR][1000 genomes]
rs73692227	0.90[EUR][1000 genomes]
rs7825629	0.83[AFR][1000 genomes]
rs7826477	0.83[AFR][1000 genomes]
rs939278	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89239000-89260800	Weak transcription	Aorta	Aorta
2	chr8:89250000-89259600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:89252600-89257600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:89252600-89264400	Weak transcription	Fetal Heart	heart
5	chr8:89254400-89256600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:89254400-89256600	Enhancers	Osteobl	bone
7	chr8:89254600-89255800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:89254600-89255800	Flanking Active TSS	NHDF-Ad	bronchial
9	chr8:89254600-89256000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:89254600-89256000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:89254600-89256200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:89254600-89256200	Enhancers	Colon Smooth Muscle	Colon
13	chr8:89254600-89256600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr8:89254600-89256600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:89254600-89256600	Enhancers	NH-A	brain
16	chr8:89254600-89257200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:89254600-89257400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:89254800-89256800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:89254800-89257200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr8:89254800-89257200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:89254800-89257600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:89255000-89257000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:89255200-89256000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:89255200-89256400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:89255400-89255800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr8:89255400-89255800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:89255400-89256000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr8:89255400-89256000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:89255400-89256000	Enhancers	Brain Angular Gyrus	brain
30	chr8:89255400-89256000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:89255400-89256000	Enhancers	Fetal Kidney	kidney
32	chr8:89255400-89256200	Flanking Active TSS	Fetal Lung	lung
33	chr8:89255400-89256400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr8:89255400-89256600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr8:89255400-89256800	Enhancers	Brain Germinal Matrix	brain
36	chr8:89255400-89257000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:89255400-89258000	Enhancers	Fetal Brain Female	brain
38	chr8:89255600-89255800	Enhancers	Brain Substantia Nigra	brain
39	chr8:89255600-89256000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr8:89255600-89256000	Enhancers	Brain Cingulate Gyrus	brain
41	chr8:89255600-89256000	Enhancers	Brain Hippocampus Middle	brain
42	chr8:89255600-89256200	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr8:89255600-89256400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:89255600-89256600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:89255600-89256800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr8:89255600-89257400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr8:89255600-89258000	Enhancers	H1 Cell Line	embryonic stem cell

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