Variant report

Variant	rs11984451
Chromosome Location	chr8:89251316-89251317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89251063..89254156-chr8:89255310..89258377,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16880226	1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16880322	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16880333	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28904598	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34725691	0.91[ASN][1000 genomes]
rs35474420	0.88[AFR][1000 genomes]
rs5016164	0.96[ASN][1000 genomes]
rs6994019	0.82[ASN][1000 genomes]
rs7010876	0.82[ASN][1000 genomes]
rs7818066	0.96[ASN][1000 genomes]
rs7825130	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89239000-89260800	Weak transcription	Aorta	Aorta
2	chr8:89240200-89254800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:89240400-89254400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:89243400-89254400	Weak transcription	Osteobl	bone
5	chr8:89243800-89252200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:89246000-89252200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:89246000-89254600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:89246000-89254800	Weak transcription	Fetal Lung	lung
9	chr8:89246000-89255400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:89247000-89252200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:89247200-89252200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:89247200-89255000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:89247400-89255600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:89249600-89254400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:89250000-89252800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:89250000-89259600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:89250200-89252600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:89250200-89254600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:89250400-89251800	Weak transcription	Hela-S3	cervix
20	chr8:89250400-89252200	Weak transcription	NHDF-Ad	bronchial
21	chr8:89250400-89252400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:89250400-89254400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:89250400-89254600	Weak transcription	NH-A	brain
24	chr8:89251200-89252400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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