Variant report

Variant	rs34914970
Chromosome Location	chr8:89239246-89239247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12548802	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13254181	0.85[AMR][1000 genomes]
rs1401861	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519934	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16879968	0.85[AMR][1000 genomes]
rs4961080	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4961082	0.85[AMR][1000 genomes]
rs6983817	0.81[AMR][1000 genomes]
rs7825629	0.81[AMR][1000 genomes]
rs7826477	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89233600-89239400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:89236800-89239600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:89237000-89244200	Weak transcription	NH-A	brain
4	chr8:89238800-89239400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:89238800-89240000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:89238800-89240200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:89238800-89243400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:89239000-89239400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:89239000-89260800	Weak transcription	Aorta	Aorta
10	chr8:89239200-89239800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:89239200-89240000	Enhancers	Fetal Lung	lung
12	chr8:89239200-89240400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:89239200-89240400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:89239200-89240600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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