Variant report

Variant	rs10094484
Chromosome Location	chr8:124661370-124661371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124655670..124657756-chr8:124660016..124662293,2	K562	blood:
2	chr8:124659242..124661407-chr8:124671915..124673705,2	MCF-7	breast:
3	chr8:124647506..124650348-chr8:124660565..124662892,2	MCF-7	breast:
4	chr8:124653035..124654923-chr8:124661285..124663313,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10109736	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10429327	0.94[EUR][1000 genomes]
rs10956142	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11783892	0.82[EUR][1000 genomes]
rs11784149	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11991567	1.00[JPT][hapmap]
rs12550449	1.00[JPT][hapmap]
rs12550643	0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4260879	0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4455809	0.85[CHB][hapmap];0.96[EUR][1000 genomes]
rs4871405	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55802621	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6470171	0.85[CHB][hapmap];0.96[EUR][1000 genomes]
rs6994286	0.94[EUR][1000 genomes]
rs7386679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825404	1.00[JPT][hapmap]
rs7835500	0.85[CHB][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124656800-124666000	Weak transcription	HSMM	muscle
2	chr8:124656800-124666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:124657000-124664200	Weak transcription	Placenta	Placenta
4	chr8:124657000-124665600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:124658800-124661400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:124658800-124661600	Weak transcription	Right Ventricle	heart
7	chr8:124659000-124661800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:124659200-124661400	Weak transcription	Psoas Muscle	Psoas
9	chr8:124659400-124667000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:124659800-124664200	Weak transcription	Fetal Stomach	stomach
11	chr8:124660000-124662400	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:124660200-124665200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
13	chr8:124660400-124661800	Enhancers	Fetal Intestine Small	intestine
14	chr8:124660400-124662800	Enhancers	Aorta	Aorta
15	chr8:124660600-124661800	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr8:124660800-124661800	Enhancers	Ovary	ovary
17	chr8:124660800-124662200	Flanking Active TSS	Fetal Heart	heart
18	chr8:124660800-124665400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:124661000-124662200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
20	chr8:124661000-124663600	Active TSS	Left Ventricle	heart
21	chr8:124661000-124666000	Active TSS	Right Atrium	heart
22	chr8:124661200-124661400	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:124661200-124661600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:124661200-124661600	Enhancers	A549	lung
25	chr8:124661200-124661800	Active TSS	Stomach Smooth Muscle	stomach
26	chr8:124661200-124662600	Weak transcription	Fetal Intestine Large	intestine
27	chr8:124661200-124663400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:124661200-124664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:124661200-124665600	Weak transcription	Osteobl	bone
30	chr8:124661200-124665800	Weak transcription	HSMMtube	muscle
31	chr8:124661200-124665800	Weak transcription	NH-A	brain
32	chr8:124661200-124666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:124661200-124666400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr8:124661200-124670000	Weak transcription	Duodenum Mucosa	Duodenum

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