Variant report

Variant	rs7825404
Chromosome Location	chr8:124645512-124645513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124644904..124649137-chr8:124652807..124658443,6	MCF-7	breast:
2	chr8:124630020..124633411-chr8:124643439..124646269,5	MCF-7	breast:
3	chr8:124644884..124646773-chr8:124663216..124665347,2	MCF-7	breast:
4	chr8:124608092..124610186-chr8:124645249..124647691,2	MCF-7	breast:
5	chr8:124643571..124646557-chr8:124651939..124654675,2	MCF-7	breast:
6	chr8:124642600..124645867-chr8:124673711..124676775,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175946	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10094484	1.00[JPT][hapmap]
rs10956138	0.88[GIH][hapmap];0.82[MEX][hapmap]
rs11991567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12545556	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs12547295	0.83[CHD][hapmap];0.88[GIH][hapmap]
rs12550449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16898637	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17254881	1.00[EUR][1000 genomes]
rs17255218	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978681	1.00[CHB][hapmap]
rs35947475	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7386679	1.00[JPT][hapmap]
rs7387172	1.00[CHB][hapmap]
rs7825091	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs7836620	1.00[CHB][hapmap]
rs9792209	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124640200-124647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124640800-124646600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:124641400-124646400	Enhancers	HMEC	breast
4	chr8:124641600-124646000	Enhancers	NHDF-Ad	bronchial
5	chr8:124641800-124646200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:124642000-124651800	Weak transcription	Right Ventricle	heart
7	chr8:124642400-124646800	Enhancers	NH-A	brain
8	chr8:124643200-124651800	Weak transcription	Psoas Muscle	Psoas
9	chr8:124643600-124645600	Weak transcription	A549	lung
10	chr8:124643800-124650800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr8:124644200-124645800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:124644200-124646000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:124644200-124646000	Enhancers	Osteobl	bone
14	chr8:124644200-124646200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:124644200-124646200	Enhancers	HSMM	muscle
16	chr8:124644400-124645600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:124644400-124646000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:124644400-124646000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:124644400-124646000	Enhancers	HSMMtube	muscle
20	chr8:124644600-124645600	Enhancers	Right Atrium	heart
21	chr8:124644600-124645600	Enhancers	NHLF	lung
22	chr8:124644600-124645800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:124644600-124646000	Enhancers	NHEK	skin
24	chr8:124644600-124646400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:124644800-124645600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:124644800-124645600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:124645000-124647200	Weak transcription	K562	blood
28	chr8:124645000-124647600	Weak transcription	Left Ventricle	heart
29	chr8:124645000-124651800	Weak transcription	Fetal Heart	heart
30	chr8:124645200-124645600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:124645200-124645600	Enhancers	Hela-S3	cervix
32	chr8:124645400-124645600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:124645400-124646000	Enhancers	Aorta	Aorta

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