Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:124640436..124642516-chr8:124772118..124774923,2	MCF-7	breast:
2	chr8:124635355..124637919-chr8:124639810..124642059,2	MCF-7	breast:
3	chr8:124640064..124642206-chr8:124659228..124661300,2	MCF-7	breast:
4	chr8:124635851..124638436-chr8:124639907..124645326,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10094484	1.00[JPT][hapmap]
rs10956138	0.88[GIH][hapmap];0.88[ASN][1000 genomes]
rs11991567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545556	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12547295	0.83[CHD][hapmap];0.88[GIH][hapmap];0.90[MEX][hapmap];0.88[ASN][1000 genomes]
rs12550449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17254881	0.95[EUR][1000 genomes]
rs17255218	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1978681	1.00[CHB][hapmap]
rs35947475	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59344306	0.93[ASN][1000 genomes]
rs62520922	0.85[ASN][1000 genomes]
rs62520925	0.92[ASN][1000 genomes]
rs6470163	0.89[ASN][1000 genomes]
rs7001678	0.93[ASN][1000 genomes]
rs73339405	0.93[ASN][1000 genomes]
rs7386679	1.00[JPT][hapmap]
rs7387172	1.00[CHB][hapmap]
rs7816145	0.93[ASN][1000 genomes]
rs7825091	1.00[CHB][hapmap]
rs7825404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7836620	1.00[CHB][hapmap]
rs9792209	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124629200-124645400	Weak transcription	Aorta	Aorta
2	chr8:124631200-124643000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:124634200-124642600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:124635200-124641600	Weak transcription	Left Ventricle	heart
5	chr8:124635200-124642400	Weak transcription	HSMMtube	muscle
6	chr8:124635200-124642800	Weak transcription	Placenta	Placenta
7	chr8:124637400-124641800	Weak transcription	Fetal Heart	heart
8	chr8:124639600-124642400	Enhancers	K562	blood
9	chr8:124639800-124641600	Weak transcription	NHDF-Ad	bronchial
10	chr8:124639800-124641800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:124640200-124647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:124640800-124646600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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