Variant report

Variant	rs7836620
Chromosome Location	chr8:124781361-124781362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124779119..124781941-chr8:125550806..125552574,2	MCF-7	breast:
2	chr16:27322814..27325675-chr8:124780748..124782249,2	MCF-7	breast:
3	chr8:124780302..124782573-chr8:125486403..125488504,7	MCF-7	breast:
4	chr8:124286589..124288147-chr8:124780495..124782975,2	K562	blood:
5	chr8:124427993..124430634-chr8:124780278..124783215,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147684	Chromatin interaction
ENSG00000156802	Chromatin interaction
ENSG00000165156	Chromatin interaction
ENSG00000156795	Chromatin interaction
ENSG00000245149	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000170881	Chromatin interaction
ENSG00000077238	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10505440	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11991567	1.00[CHB][hapmap]
rs12545556	1.00[CHB][hapmap]
rs12550449	1.00[CHB][hapmap]
rs12680426	0.82[EUR][1000 genomes]
rs1560513	0.86[EUR][1000 genomes]
rs16898866	0.87[AFR][1000 genomes]
rs1978679	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1978680	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1978681	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes]
rs1991697	0.86[EUR][1000 genomes]
rs2116356	0.86[EUR][1000 genomes]
rs2163531	0.86[EUR][1000 genomes]
rs2163532	0.86[EUR][1000 genomes]
rs2891803	0.86[EUR][1000 genomes]
rs6651229	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7387172	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825091	1.00[CHB][hapmap]
rs7825404	1.00[CHB][hapmap]
rs9792209	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
3	esv3411799	chr8:124779296-124782144	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124779600-124781400	Active TSS	Fetal Lung	lung
2	chr8:124779800-124781400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:124779800-124781400	Active TSS	Brain Angular Gyrus	brain
4	chr8:124779800-124781400	Active TSS	Brain Anterior Caudate	brain
5	chr8:124779800-124781400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr8:124779800-124781600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:124779800-124781600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr8:124779800-124781600	Active TSS	Esophagus	oesophagus
9	chr8:124779800-124781600	Active TSS	Sigmoid Colon	Sigmoid Colon
10	chr8:124779800-124781800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:124779800-124782000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:124779800-124782200	Active TSS	H1 Cell Line	embryonic stem cell
13	chr8:124779800-124782800	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr8:124779800-124783200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:124780000-124781400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:124780000-124781400	Active TSS	Brain Cingulate Gyrus	brain
17	chr8:124780000-124781400	Active TSS	Colon Smooth Muscle	Colon
18	chr8:124780000-124781400	Active TSS	Placenta Amnion	Placenta Amnion
19	chr8:124780000-124781600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:124780000-124781600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:124780000-124781600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:124780000-124781600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr8:124780000-124781600	Active TSS	Fetal Kidney	kidney
24	chr8:124780000-124781600	Active TSS	Right Ventricle	heart
25	chr8:124780000-124781600	Active TSS	Small Intestine	intestine
26	chr8:124780000-124781800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:124780000-124781800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:124780000-124781800	Active TSS	Left Ventricle	heart
29	chr8:124780000-124781800	Active TSS	Ovary	ovary
30	chr8:124780000-124781800	Active TSS	HSMMtube	muscle
31	chr8:124780000-124782000	Active TSS	H9 Cell Line	embryonic stem cell
32	chr8:124780000-124782000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:124780000-124782400	Active TSS	Aorta	Aorta
34	chr8:124780000-124782400	Active TSS	Colonic Mucosa	Colon
35	chr8:124780000-124782600	Active TSS	A549	lung
36	chr8:124780000-124783200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:124780200-124781400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:124780200-124781400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr8:124780200-124781400	Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr8:124780200-124781400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr8:124780200-124781400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr8:124780200-124781400	Active TSS	Liver	Liver
43	chr8:124780200-124781400	Active TSS	Duodenum Mucosa	Duodenum
44	chr8:124780200-124781400	Active TSS	Placenta	Placenta
45	chr8:124780200-124781400	Active TSS	Rectal Mucosa Donor 31	rectum
46	chr8:124780200-124781400	Active TSS	Rectal Smooth Muscle	rectum
47	chr8:124780200-124781400	Active TSS	Stomach Mucosa	stomach
48	chr8:124780200-124781400	Active TSS	Thymus	Thymus
49	chr8:124780200-124781400	Active TSS	Spleen	Spleen
50	chr8:124780200-124781400	Active TSS	Hela-S3	cervix

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