Variant report

Variant	rs10094841
Chromosome Location	chr8:50629963-50629964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10098886	0.96[EUR][1000 genomes]
rs10113543	0.82[EUR][1000 genomes]
rs10504084	0.94[ASN][1000 genomes]
rs12544214	0.96[EUR][1000 genomes]
rs12549135	0.93[EUR][1000 genomes]
rs13262497	0.96[EUR][1000 genomes]
rs13281357	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1353479	0.96[EUR][1000 genomes]
rs1390584	0.96[EUR][1000 genomes]
rs1458566	0.83[EUR][1000 genomes]
rs1496301	0.96[EUR][1000 genomes]
rs1496306	0.96[EUR][1000 genomes]
rs1496308	0.96[EUR][1000 genomes]
rs1496317	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16911985	0.83[ASN][1000 genomes]
rs16919249	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2926089	0.82[EUR][1000 genomes]
rs2926092	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2926100	0.83[EUR][1000 genomes]
rs2926101	0.82[EUR][1000 genomes]
rs2926102	0.82[EUR][1000 genomes]
rs2926103	0.82[EUR][1000 genomes]
rs2926104	0.82[EUR][1000 genomes]
rs2956826	0.83[EUR][1000 genomes]
rs2956829	0.82[EUR][1000 genomes]
rs2956839	0.82[EUR][1000 genomes]
rs2960472	0.82[EUR][1000 genomes]
rs2960473	0.82[EUR][1000 genomes]
rs2960474	0.80[EUR][1000 genomes]
rs2960475	0.83[EUR][1000 genomes]
rs2960481	0.83[EUR][1000 genomes]
rs2960482	0.82[EUR][1000 genomes]
rs2960483	0.83[EUR][1000 genomes]
rs2960484	0.82[EUR][1000 genomes]
rs2960486	0.83[EUR][1000 genomes]
rs34018173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34841345	0.87[ASN][1000 genomes]
rs35260972	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35435908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35489821	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36159993	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873359	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6472554	0.82[EUR][1000 genomes]
rs6998709	0.96[EUR][1000 genomes]
rs6999993	0.96[EUR][1000 genomes]
rs7013067	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7015460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015900	0.95[EUR][1000 genomes]
rs7819004	0.96[EUR][1000 genomes]
rs7821296	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7822184	0.96[EUR][1000 genomes]
rs7828606	0.82[EUR][1000 genomes]
rs7831715	0.96[EUR][1000 genomes]
rs7838995	0.83[EUR][1000 genomes]
rs7839653	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv890863	chr8:50430756-50639293	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50626600-50635200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:50628200-50630200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:50628200-50630800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:50628600-50630000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:50628600-50630200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:50628600-50630400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:50628800-50630400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:50629000-50630800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:50629000-50633800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:50629400-50630000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr8:50629600-50630200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:50629800-50630200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:50629800-50630800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links