Variant report

Variant	rs34841345
Chromosome Location	chr8:50647937-50647938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10094841	0.87[ASN][1000 genomes]
rs10504084	0.81[ASN][1000 genomes]
rs1390586	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1496311	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1496312	0.83[EUR][1000 genomes]
rs1496317	0.85[ASN][1000 genomes]
rs16911985	0.96[ASN][1000 genomes]
rs16919249	0.82[ASN][1000 genomes]
rs2385531	0.83[EUR][1000 genomes]
rs34018173	0.87[ASN][1000 genomes]
rs35260972	0.85[ASN][1000 genomes]
rs35435908	0.87[ASN][1000 genomes]
rs35489821	0.85[ASN][1000 genomes]
rs35623593	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36159993	0.85[ASN][1000 genomes]
rs4873367	0.83[EUR][1000 genomes]
rs7015460	0.87[ASN][1000 genomes]
rs7818806	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50646200-50651600	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links