Variant report

Variant	rs10094942
Chromosome Location	chr8:103402105-103402106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103401667..103404139-chr8:103423030..103426028,2	MCF-7	breast:
2	chr8:103401111..103403412-chr8:103418397..103420245,2	K562	blood:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10102559	0.83[ASN][1000 genomes]
rs10103923	0.83[ASN][1000 genomes]
rs10108510	0.83[ASN][1000 genomes]
rs12114813	0.83[ASN][1000 genomes]
rs12335330	0.83[ASN][1000 genomes]
rs16869384	0.81[AFR][1000 genomes]
rs28368586	0.83[ASN][1000 genomes]
rs28491719	0.83[ASN][1000 genomes]
rs28658545	0.83[ASN][1000 genomes]
rs28789744	0.83[ASN][1000 genomes]
rs2925785	0.83[ASN][1000 genomes]
rs2978424	0.83[ASN][1000 genomes]
rs2978425	0.83[ASN][1000 genomes]
rs3018536	0.83[ASN][1000 genomes]
rs3018538	0.86[ASN][1000 genomes]
rs3018540	0.83[ASN][1000 genomes]
rs3018541	0.83[ASN][1000 genomes]
rs3018542	0.83[ASN][1000 genomes]
rs60133998	0.81[AFR][1000 genomes]
rs73285212	0.81[AFR][1000 genomes]
rs73285234	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	esv2761454	chr8:103394602-103414235	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103369800-103421000	Weak transcription	Colonic Mucosa	Colon
2	chr8:103372400-103412600	Weak transcription	Fetal Intestine Large	intestine
3	chr8:103372800-103403800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:103372800-103410200	Weak transcription	Fetal Kidney	kidney
5	chr8:103373000-103402400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:103384200-103411600	Weak transcription	Lung	lung
7	chr8:103384200-103416800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:103387000-103402800	Weak transcription	Dnd41	blood
9	chr8:103388200-103407200	Weak transcription	Right Ventricle	heart
10	chr8:103388400-103406400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:103388400-103416600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:103394600-103407200	Weak transcription	Pancreas	Pancrea
13	chr8:103394800-103403800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:103395000-103406800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr8:103395200-103406800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:103395200-103406800	Weak transcription	Brain Substantia Nigra	brain
17	chr8:103395400-103402800	Weak transcription	Thymus	Thymus
18	chr8:103395600-103406800	Weak transcription	Brain Angular Gyrus	brain
19	chr8:103395600-103407200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:103395800-103402600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr8:103395800-103402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:103395800-103402800	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:103395800-103402800	Weak transcription	Placenta	Placenta
24	chr8:103395800-103406800	Weak transcription	Aorta	Aorta
25	chr8:103395800-103420800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:103395800-103422200	Weak transcription	HSMMtube	muscle
27	chr8:103396000-103405800	Weak transcription	Right Atrium	heart
28	chr8:103396000-103410200	Weak transcription	Brain Germinal Matrix	brain
29	chr8:103396200-103402400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:103396200-103402800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr8:103396200-103402800	Weak transcription	Fetal Lung	lung
32	chr8:103396200-103402800	Weak transcription	Fetal Thymus	thymus
33	chr8:103396200-103403600	Weak transcription	NH-A	brain
34	chr8:103396200-103404200	Weak transcription	Fetal Heart	heart
35	chr8:103396200-103407200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:103396200-103407400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr8:103396200-103408200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:103396200-103409600	Weak transcription	Fetal Stomach	stomach
39	chr8:103396800-103403000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:103396800-103407400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr8:103397000-103402400	Weak transcription	Primary T cells from cord blood	blood
42	chr8:103397000-103402400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:103397000-103402800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:103397000-103402800	Weak transcription	NHEK	skin
45	chr8:103397000-103413600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr8:103397200-103402800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr8:103397200-103406800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr8:103397200-103406800	Weak transcription	HMEC	breast
49	chr8:103397200-103408000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:103397400-103402800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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