Variant report

Variant	rs73285234
Chromosome Location	chr8:103387675-103387676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103386600..103389485-chr8:103399454..103401302,2	MCF-7	breast:
2	chr8:103386734..103388717-chr8:103664432..103667314,2	MCF-7	breast:
3	chr8:103382978..103384623-chr8:103386159..103388711,2	K562	blood:
4	chr8:103386862..103390311-chr8:103391169..103396549,4	MCF-7	breast:
5	chr8:103383132..103388008-chr8:103389568..103392720,5	K562	blood:
6	chr8:103386914..103388455-chr8:103404342..103405852,2	K562	blood:
7	chr8:103385007..103388103-chr8:103392902..103395894,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238533	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10094942	0.81[AFR][1000 genomes]
rs16869317	1.00[EUR][1000 genomes]
rs16869318	1.00[EUR][1000 genomes]
rs16869320	1.00[EUR][1000 genomes]
rs16869360	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16869384	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16869390	1.00[EUR][1000 genomes]
rs16869421	1.00[EUR][1000 genomes]
rs28927984	1.00[EUR][1000 genomes]
rs58936362	1.00[EUR][1000 genomes]
rs60133998	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60370901	1.00[EUR][1000 genomes]
rs6982960	1.00[EUR][1000 genomes]
rs7002260	1.00[EUR][1000 genomes]
rs7006719	1.00[EUR][1000 genomes]
rs73283367	1.00[EUR][1000 genomes]
rs73283374	1.00[EUR][1000 genomes]
rs73283377	1.00[EUR][1000 genomes]
rs73283386	1.00[EUR][1000 genomes]
rs73283395	1.00[EUR][1000 genomes]
rs73283398	1.00[EUR][1000 genomes]
rs73283402	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73285212	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73285216	1.00[EUR][1000 genomes]
rs73285253	1.00[EUR][1000 genomes]
rs73285256	1.00[EUR][1000 genomes]
rs73285272	1.00[EUR][1000 genomes]
rs73285276	1.00[EUR][1000 genomes]
rs73285278	1.00[EUR][1000 genomes]
rs73285292	1.00[EUR][1000 genomes]
rs73285300	1.00[EUR][1000 genomes]
rs7813561	1.00[EUR][1000 genomes]
rs7819190	1.00[EUR][1000 genomes]
rs7844478	1.00[EUR][1000 genomes]
rs7845522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
9	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103365400-103387800	Weak transcription	Stomach Mucosa	stomach
2	chr8:103369800-103421000	Weak transcription	Colonic Mucosa	Colon
3	chr8:103371600-103394400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:103372400-103388200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr8:103372400-103394200	Weak transcription	Thymus	Thymus
6	chr8:103372400-103395200	Weak transcription	Fetal Brain Female	brain
7	chr8:103372400-103412600	Weak transcription	Fetal Intestine Large	intestine
8	chr8:103372600-103393000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:103372600-103393200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:103372800-103387800	Weak transcription	HMEC	breast
11	chr8:103372800-103394200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:103372800-103394400	Weak transcription	Brain Germinal Matrix	brain
13	chr8:103372800-103403800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:103372800-103410200	Weak transcription	Fetal Kidney	kidney
15	chr8:103373000-103394400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:103373000-103395000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:103373000-103395400	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:103373000-103402400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:103373200-103401400	Weak transcription	Hela-S3	cervix
20	chr8:103373400-103388000	Weak transcription	HSMM	muscle
21	chr8:103373400-103394200	Weak transcription	Primary T cells from cord blood	blood
22	chr8:103373400-103394200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:103373600-103394600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr8:103376600-103388000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:103379800-103387800	Weak transcription	Brain Substantia Nigra	brain
26	chr8:103379800-103387800	Weak transcription	Fetal Lung	lung
27	chr8:103380200-103393200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr8:103380200-103397800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr8:103380800-103387800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr8:103380800-103387800	Weak transcription	Spleen	Spleen
31	chr8:103380800-103387800	Weak transcription	NHDF-Ad	bronchial
32	chr8:103380800-103390800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:103381000-103387800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr8:103381000-103387800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr8:103381000-103387800	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:103381000-103387800	Weak transcription	Brain Angular Gyrus	brain
37	chr8:103381000-103387800	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:103381000-103387800	Weak transcription	Gastric	stomach
39	chr8:103381000-103387800	Weak transcription	Right Ventricle	heart
40	chr8:103381000-103390200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr8:103381000-103390200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr8:103381000-103391000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:103381000-103393400	Weak transcription	Pancreas	Pancrea
44	chr8:103381000-103393400	Weak transcription	Right Atrium	heart
45	chr8:103381000-103393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr8:103381000-103394400	Weak transcription	A549	lung
47	chr8:103381000-103394600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr8:103381000-103395200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr8:103381000-103395200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr8:103381000-103395200	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links