Variant report

Variant	rs7813561
Chromosome Location	chr8:103440001-103440002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103435300..103437498-chr8:103439905..103442249,2	K562	blood:
2	chr8:103438828..103441825-chr8:103444770..103446415,2	K562	blood:
3	chr8:103439421..103441100-chr8:103448054..103450571,2	MCF-7	breast:
4	chr8:103427417..103430213-chr8:103437783..103440651,2	MCF-7	breast:
5	chr8:103423416..103425186-chr8:103439057..103441485,2	MCF-7	breast:
6	chr8:103422249..103427924-chr8:103438177..103442198,4	K562	blood:

Variant related genes	Relation type
ENSG00000253923	Chromatin interaction
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16869317	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16869318	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16869320	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16869360	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16869384	1.00[EUR][1000 genomes]
rs16869390	1.00[EUR][1000 genomes]
rs16869421	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28927984	1.00[EUR][1000 genomes]
rs58936362	1.00[EUR][1000 genomes]
rs60133998	1.00[EUR][1000 genomes]
rs60370901	1.00[EUR][1000 genomes]
rs6982960	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7002260	1.00[EUR][1000 genomes]
rs7006719	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7007721	1.00[CEU][hapmap]
rs73283367	1.00[EUR][1000 genomes]
rs73283374	1.00[EUR][1000 genomes]
rs73283377	1.00[EUR][1000 genomes]
rs73283386	1.00[EUR][1000 genomes]
rs73283395	1.00[EUR][1000 genomes]
rs73283398	1.00[EUR][1000 genomes]
rs73283402	1.00[EUR][1000 genomes]
rs73285212	1.00[EUR][1000 genomes]
rs73285216	1.00[EUR][1000 genomes]
rs73285234	1.00[EUR][1000 genomes]
rs73285253	1.00[EUR][1000 genomes]
rs73285256	1.00[EUR][1000 genomes]
rs73285272	1.00[EUR][1000 genomes]
rs73285276	1.00[EUR][1000 genomes]
rs73285278	1.00[EUR][1000 genomes]
rs73285292	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285300	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819190	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7844478	1.00[EUR][1000 genomes]
rs7845522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103430600-103444400	Weak transcription	GM12878-XiMat	blood
2	chr8:103437200-103440400	Enhancers	HepG2	liver
3	chr8:103438600-103449200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:103439400-103440400	Enhancers	Colon Smooth Muscle	Colon
5	chr8:103439400-103440600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:103439600-103440400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:103439600-103440400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:103439600-103440400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:103439600-103440400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:103439600-103440400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:103439600-103440400	Enhancers	Fetal Stomach	stomach
12	chr8:103439600-103440600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:103439600-103440600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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