Variant report

Variant	rs73285292
Chromosome Location	chr8:103448076-103448077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103446967..103449088-chr8:103820705..103822908,2	MCF-7	breast:
2	chr8:103423291..103426053-chr8:103446476..103449606,3	MCF-7	breast:
3	chr8:103439421..103441100-chr8:103448054..103450571,2	MCF-7	breast:
4	chr8:103421569..103424868-chr8:103447011..103449629,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104517	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16869317	1.00[EUR][1000 genomes]
rs16869318	1.00[EUR][1000 genomes]
rs16869320	1.00[EUR][1000 genomes]
rs16869360	1.00[EUR][1000 genomes]
rs16869384	1.00[EUR][1000 genomes]
rs16869390	1.00[EUR][1000 genomes]
rs16869421	1.00[EUR][1000 genomes]
rs28927984	1.00[EUR][1000 genomes]
rs58936362	1.00[EUR][1000 genomes]
rs60133998	1.00[EUR][1000 genomes]
rs60370901	1.00[EUR][1000 genomes]
rs6982960	1.00[EUR][1000 genomes]
rs7002260	1.00[EUR][1000 genomes]
rs7006719	1.00[EUR][1000 genomes]
rs73283367	1.00[EUR][1000 genomes]
rs73283374	1.00[EUR][1000 genomes]
rs73283377	1.00[EUR][1000 genomes]
rs73283386	1.00[EUR][1000 genomes]
rs73283395	1.00[EUR][1000 genomes]
rs73283398	1.00[EUR][1000 genomes]
rs73283402	1.00[EUR][1000 genomes]
rs73285212	1.00[EUR][1000 genomes]
rs73285216	1.00[EUR][1000 genomes]
rs73285234	1.00[EUR][1000 genomes]
rs73285253	1.00[EUR][1000 genomes]
rs73285256	1.00[EUR][1000 genomes]
rs73285272	1.00[EUR][1000 genomes]
rs73285276	1.00[EUR][1000 genomes]
rs73285278	1.00[EUR][1000 genomes]
rs73285300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813561	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7819190	1.00[EUR][1000 genomes]
rs7844478	1.00[EUR][1000 genomes]
rs7845522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103438600-103449200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:103446200-103448200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:103446800-103448400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:103447000-103448400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:103447000-103448600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:103447000-103448600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:103447000-103448600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:103447000-103448800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:103447000-103449800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:103447000-103449800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:103447200-103448400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:103447200-103450800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:103447400-103449400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:103447400-103449600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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