Variant report

Variant	rs10095896
Chromosome Location	chr8:95810190-95810191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr8:95809672-95810306	IMR90	lung:	n/a	n/a
2	IRF1	chr8:95810183-95810270	K562	blood:	n/a	n/a
3	KAP1	chr8:95809583-95810313	U2OS	brain:	n/a	n/a
4	ZNF143	chr8:95810042-95810265	K562	blood:	n/a	n/a
5	CEBPB	chr8:95809960-95810288	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95809644..95812311-chr8:95818366..95820931,2	K562	blood:
2	chr8:95809601..95812028-chr8:95833895..95836777,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254307	TF binding region
ENSG00000164941	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10101523	0.85[CEU][hapmap]
rs12541990	0.96[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap]
rs12543503	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12546825	0.91[EUR][1000 genomes]
rs12547930	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12547969	0.85[EUR][1000 genomes]
rs13258377	0.86[EUR][1000 genomes]
rs13259064	0.88[EUR][1000 genomes]
rs13262255	0.81[CEU][hapmap]
rs17718793	0.85[CEU][hapmap]
rs35184808	0.92[EUR][1000 genomes]
rs4735322	0.87[EUR][1000 genomes]
rs4735324	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6471483	0.84[CEU][hapmap]
rs66831269	0.92[EUR][1000 genomes]
rs7387701	0.81[CEU][hapmap]
rs7813205	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7824039	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7826057	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7840896	0.81[CEU][hapmap]
rs7844431	0.96[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95786200-95811600	Weak transcription	Spleen	Spleen
2	chr8:95786200-95812800	Weak transcription	Gastric	stomach
3	chr8:95791400-95812400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:95792000-95811600	Weak transcription	Thymus	Thymus
5	chr8:95798000-95810600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:95798000-95810600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:95799200-95814400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:95799800-95811400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:95809200-95810200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:95809200-95810200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:95809200-95810200	Enhancers	HSMM	muscle
12	chr8:95809400-95810200	Flanking Active TSS	Fetal Kidney	kidney
13	chr8:95809400-95810200	Enhancers	Fetal Muscle Leg	muscle
14	chr8:95809400-95810200	Enhancers	Fetal Stomach	stomach
15	chr8:95809400-95810200	Enhancers	HMEC	breast
16	chr8:95809400-95810200	Flanking Active TSS	Osteobl	bone
17	chr8:95809600-95810200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:95809600-95810200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:95809600-95810200	Enhancers	Adipose Nuclei	Adipose
20	chr8:95809600-95810200	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr8:95809600-95810200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr8:95809600-95810800	Enhancers	Placenta	Placenta
23	chr8:95809800-95810200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:95809800-95810200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr8:95809800-95810200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:95809800-95810200	Enhancers	Ovary	ovary
27	chr8:95809800-95810200	Enhancers	K562	blood
28	chr8:95809800-95810200	Enhancers	NH-A	brain
29	chr8:95810000-95810200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:95810000-95810200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:95810000-95810200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr8:95810000-95810200	Enhancers	Colon Smooth Muscle	Colon
33	chr8:95810000-95810200	Active TSS	Rectal Smooth Muscle	rectum
34	chr8:95810000-95810200	Enhancers	Stomach Smooth Muscle	stomach
35	chr8:95810000-95810200	Enhancers	HSMMtube	muscle
36	chr8:95810000-95810200	Flanking Active TSS	NHDF-Ad	bronchial
37	chr8:95810000-95810400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:95810000-95810400	Enhancers	NHLF	lung
39	chr8:95810000-95810600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:95810000-95814000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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