Variant report

Variant	rs7387701
Chromosome Location	chr8:95764154-95764155
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95760161..95762150-chr8:95763725..95765475,2	MCF-7	breast:
2	chr8:95762944..95765189-chr8:95766052..95768362,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090736	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10095896	0.81[CEU][hapmap]
rs10101523	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11987620	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11987988	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11988403	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11995317	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12176630	0.81[CHB][hapmap]
rs12234995	0.91[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12543503	0.92[CEU][hapmap]
rs12547930	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13250360	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13258377	0.86[ASN][1000 genomes]
rs13259064	0.83[ASN][1000 genomes]
rs13262255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13269813	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16916994	0.81[CHB][hapmap]
rs17646077	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17718793	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28750318	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34759911	0.84[ASN][1000 genomes]
rs4644204	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4735322	0.86[ASN][1000 genomes]
rs4735324	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6471483	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7386109	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7826057	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7840896	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95732800-95780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:95733000-95784400	Weak transcription	Esophagus	oesophagus
3	chr8:95733000-95803800	Weak transcription	Psoas Muscle	Psoas
4	chr8:95733000-95805200	Weak transcription	Colonic Mucosa	Colon
5	chr8:95733200-95774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:95733200-95805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:95733400-95783800	Weak transcription	Gastric	stomach
8	chr8:95733400-95784800	Weak transcription	Small Intestine	intestine
9	chr8:95733600-95779400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:95733600-95782600	Weak transcription	Brain Substantia Nigra	brain
11	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:95733800-95770400	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:95733800-95783600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain
15	chr8:95734000-95783600	Weak transcription	Fetal Kidney	kidney
16	chr8:95734200-95784600	Weak transcription	Brain Angular Gyrus	brain
17	chr8:95735400-95787800	Weak transcription	Hela-S3	cervix
18	chr8:95737800-95777800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:95740600-95769400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:95740800-95782200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr8:95740800-95782800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:95740800-95799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr8:95741000-95768600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr8:95741000-95778000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr8:95741200-95769600	Weak transcription	Brain Germinal Matrix	brain
26	chr8:95741200-95770000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr8:95741200-95778800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr8:95741200-95783600	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:95741200-95783800	Weak transcription	HMEC	breast
30	chr8:95744000-95790800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:95745000-95782200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:95745400-95769600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr8:95746800-95777200	Weak transcription	Osteobl	bone
34	chr8:95747600-95768800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:95748400-95769200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:95752400-95767600	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:95752400-95768600	Weak transcription	Adipose Nuclei	Adipose
38	chr8:95752400-95768800	Weak transcription	Placenta	Placenta
39	chr8:95752400-95769800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:95752400-95770000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:95752400-95772800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr8:95752400-95781800	Weak transcription	NH-A	brain
43	chr8:95752400-95809200	Weak transcription	NHLF	lung
44	chr8:95752600-95767000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:95752600-95772200	Weak transcription	HSMMtube	muscle
46	chr8:95752600-95772400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr8:95752600-95774600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:95752600-95779400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr8:95752600-95780200	Weak transcription	HSMM	muscle
50	chr8:95752600-95784200	Weak transcription	A549	lung

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