Variant report

Variant	rs4644204
Chromosome Location	chr8:95779544-95779545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95772422..95774937-chr8:95778657..95780435,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10090736	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10101523	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11987988	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11988403	0.83[EUR][1000 genomes]
rs11995317	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12234995	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12547930	0.86[ASN][1000 genomes]
rs12547969	0.81[ASN][1000 genomes]
rs13250360	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258377	0.89[ASN][1000 genomes]
rs13259064	0.86[ASN][1000 genomes]
rs13262255	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13269813	0.85[EUR][1000 genomes]
rs17646077	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17718793	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28750318	0.85[EUR][1000 genomes]
rs34759911	0.87[ASN][1000 genomes]
rs4735322	0.89[ASN][1000 genomes]
rs4735324	0.89[ASN][1000 genomes]
rs6471483	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7386109	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7387701	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7826057	0.88[ASN][1000 genomes]
rs7840896	0.85[EUR][1000 genomes]
rs7844431	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95732800-95780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:95733000-95784400	Weak transcription	Esophagus	oesophagus
3	chr8:95733000-95803800	Weak transcription	Psoas Muscle	Psoas
4	chr8:95733000-95805200	Weak transcription	Colonic Mucosa	Colon
5	chr8:95733200-95805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:95733400-95783800	Weak transcription	Gastric	stomach
7	chr8:95733400-95784800	Weak transcription	Small Intestine	intestine
8	chr8:95733600-95782600	Weak transcription	Brain Substantia Nigra	brain
9	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:95733800-95783600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain
12	chr8:95734000-95783600	Weak transcription	Fetal Kidney	kidney
13	chr8:95734200-95784600	Weak transcription	Brain Angular Gyrus	brain
14	chr8:95735400-95787800	Weak transcription	Hela-S3	cervix
15	chr8:95740800-95782200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:95740800-95782800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:95740800-95799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:95741200-95783600	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:95741200-95783800	Weak transcription	HMEC	breast
20	chr8:95744000-95790800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr8:95745000-95782200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:95752400-95781800	Weak transcription	NH-A	brain
23	chr8:95752400-95809200	Weak transcription	NHLF	lung
24	chr8:95752600-95780200	Weak transcription	HSMM	muscle
25	chr8:95752600-95784200	Weak transcription	A549	lung
26	chr8:95752600-95793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr8:95752600-95805600	Weak transcription	NHEK	skin
28	chr8:95753600-95791200	Weak transcription	Primary B cells from cord blood	blood
29	chr8:95757800-95783200	Weak transcription	GM12878-XiMat	blood
30	chr8:95761000-95782800	Weak transcription	Thymus	Thymus
31	chr8:95761000-95783800	Weak transcription	HepG2	liver
32	chr8:95761800-95782800	Weak transcription	Lung	lung
33	chr8:95761800-95784600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:95761800-95785400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:95761800-95803600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:95762000-95783800	Weak transcription	Aorta	Aorta
37	chr8:95762200-95782800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr8:95762200-95793600	Weak transcription	Stomach Mucosa	stomach
39	chr8:95766200-95788400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:95767600-95795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr8:95769400-95780200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:95770400-95783800	Weak transcription	Brain Germinal Matrix	brain
43	chr8:95771400-95782600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:95771400-95783400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:95771600-95782200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr8:95772400-95784600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr8:95772600-95782800	Weak transcription	Pancreas	Pancrea
48	chr8:95772600-95783400	Weak transcription	Right Ventricle	heart
49	chr8:95772800-95781200	Strong transcription	Liver	Liver
50	chr8:95772800-95782800	Weak transcription	Spleen	Spleen

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