Variant report
| Variant | rs10096271 |
|---|---|
| Chromosome Location | chr8:90875516-90875517 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:90874624..90876354-chr8:90878037..90880755,2 | MCF-7 | breast: | |
| 2 | chr8:90873270..90875909-chr8:90879908..90881482,2 | K562 | blood: | |
| 3 | chr8:90874955..90877119-chr8:90913162..90914813,2 | MCF-7 | breast: | |
| 4 | chr8:90867270..90880457-chr8:90913050..90918593,18 | MCF-7 | breast: | |
| 5 | chr8:90869094..90872518-chr8:90873810..90876034,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000207359 | Chromatin interaction |
| ENSG00000164823 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10094579 | 0.93[ASN][1000 genomes] |
| rs11785163 | 0.89[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12155807 | 0.93[ASN][1000 genomes] |
| rs13260987 | 0.96[ASN][1000 genomes] |
| rs13278954 | 0.93[ASN][1000 genomes] |
| rs16901016 | 0.93[ASN][1000 genomes] |
| rs2338883 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28766093 | 0.93[ASN][1000 genomes] |
| rs2879287 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34525502 | 0.91[ASN][1000 genomes] |
| rs34642426 | 0.93[ASN][1000 genomes] |
| rs34699769 | 0.91[ASN][1000 genomes] |
| rs35183880 | 0.93[ASN][1000 genomes] |
| rs6984540 | 0.93[ASN][1000 genomes] |
| rs7013987 | 0.98[ASN][1000 genomes] |
| rs7015630 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933502 | chr8:90702392-91049100 | Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 62 gene(s) | inside rSNPs | diseases |
| 2 | nsv934114 | chr8:90720182-90999106 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 58 gene(s) | inside rSNPs | diseases |
| 3 | nsv891182 | chr8:90785685-90888786 | Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
