Variant report

Variant	rs2879287
Chromosome Location	chr8:90877465-90877466
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90867270..90880457-chr8:90913050..90918593,18	MCF-7	breast:
2	chr8:90869811..90872309-chr8:90877173..90879191,2	MCF-7	breast:
3	chr8:90861358..90862876-chr8:90877013..90879435,2	MCF-7	breast:
4	chr8:90876426..90880425-chr8:90881590..90883827,5	MCF-7	breast:
5	chr8:90876781..90880593-chr8:90896349..90898654,4	MCF-7	breast:
6	chr8:90875884..90877610-chr8:90879120..90881443,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10094579	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs10096271	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11785163	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12155807	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12675822	0.85[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12680009	0.86[CEU][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13260987	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13277948	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs13278954	0.94[ASN][1000 genomes]
rs16901016	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.94[ASN][1000 genomes]
rs2338883	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28766093	0.94[ASN][1000 genomes]
rs34525502	0.93[ASN][1000 genomes]
rs34642426	0.94[ASN][1000 genomes]
rs34699769	0.93[ASN][1000 genomes]
rs35183880	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]
rs365871	0.81[ASN][1000 genomes]
rs386857	0.81[ASN][1000 genomes]
rs398959	0.80[ASN][1000 genomes]
rs400571	0.81[ASN][1000 genomes]
rs410577	0.81[ASN][1000 genomes]
rs6984540	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7013987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7015630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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