Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:90871125..90874218-chr8:90995397..90997116,3	MCF-7	breast:
2	chr8:90873270..90875909-chr8:90879908..90881482,2	K562	blood:
3	chr8:90867270..90880457-chr8:90913050..90918593,18	MCF-7	breast:
4	chr8:90864006..90868898-chr8:90869518..90873802,5	K562	blood:
5	chr8:90869160..90871090-chr8:90871381..90873801,2	MCF-7	breast:
6	chr8:90864006..90868898-chr8:90869518..90873896,4	K562	blood:
7	chr8:90868769..90874649-chr8:90891359..90894975,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11785163	0.81[ASN][1000 genomes]
rs2338883	0.81[ASN][1000 genomes]
rs2879287	0.81[ASN][1000 genomes]
rs367640	0.90[EUR][1000 genomes]
rs374957	0.93[ASN][1000 genomes]
rs376962	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs377897	0.90[EUR][1000 genomes]
rs379015	0.91[EUR][1000 genomes]
rs380425	0.87[EUR][1000 genomes]
rs381456	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs386587	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs386857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs388866	0.91[EUR][1000 genomes]
rs390536	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs39519	0.91[ASN][1000 genomes]
rs39771	0.93[ASN][1000 genomes]
rs39772	0.91[ASN][1000 genomes]
rs398959	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400571	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs410577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410663	0.95[AFR][1000 genomes]
rs425140	0.90[EUR][1000 genomes]
rs425312	0.91[ASN][1000 genomes]
rs426240	0.94[ASN][1000 genomes]
rs43136	0.91[ASN][1000 genomes]
rs43229	0.91[ASN][1000 genomes]
rs432457	0.90[EUR][1000 genomes]
rs438485	0.91[ASN][1000 genomes]
rs7013987	0.81[ASN][1000 genomes]
rs7015630	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90869200-90873800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:90870000-90874200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:90871000-90874400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:90871200-90873800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:90871600-90874200	Weak transcription	Brain Substantia Nigra	brain
6	chr8:90872000-90874600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:90872200-90874000	Weak transcription	A549	lung
8	chr8:90873000-90874400	Weak transcription	Adipose Nuclei	Adipose
9	chr8:90873400-90873800	Weak transcription	HSMMtube	muscle

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