Variant report

Variant	rs386857
Chromosome Location	chr8:90875052-90875053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90874624..90876354-chr8:90878037..90880755,2	MCF-7	breast:
2	chr8:90873270..90875909-chr8:90879908..90881482,2	K562	blood:
3	chr8:90874955..90877119-chr8:90913162..90914813,2	MCF-7	breast:
4	chr8:90867270..90880457-chr8:90913050..90918593,18	MCF-7	breast:
5	chr8:90869094..90872518-chr8:90873810..90876034,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11785163	0.81[ASN][1000 genomes]
rs2338883	0.81[ASN][1000 genomes]
rs2879287	0.81[ASN][1000 genomes]
rs365871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs367640	0.90[EUR][1000 genomes]
rs369771	0.89[JPT][hapmap]
rs374957	0.89[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs376962	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs377897	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs379015	0.91[EUR][1000 genomes]
rs380425	0.87[EUR][1000 genomes]
rs381456	0.91[CEU][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs386587	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs388866	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs390536	0.91[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs394108	0.84[JPT][hapmap]
rs39515	0.84[JPT][hapmap]
rs39519	0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs39771	0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs39772	0.91[ASN][1000 genomes]
rs398959	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs410577	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs410663	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs425140	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs425312	0.91[ASN][1000 genomes]
rs426240	0.94[ASN][1000 genomes]
rs43136	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs43229	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs432457	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs438485	0.85[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs454561	0.89[JPT][hapmap]
rs7013987	0.81[ASN][1000 genomes]
rs7015630	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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