Variant report

Variant	rs10096633
Chromosome Location	chr8:19830921-19830922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1011685	1.00[ASN][1000 genomes]
rs1059611	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11570891	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11989309	0.88[ASN][1000 genomes]
rs12678603	0.88[ASN][1000 genomes]
rs12678604	0.88[ASN][1000 genomes]
rs12678919	0.96[ASN][1000 genomes]
rs12679834	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17091909	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17411024	0.98[ASN][1000 genomes]
rs17411113	0.98[ASN][1000 genomes]
rs17482753	1.00[ASN][1000 genomes]
rs1803924	0.96[ASN][1000 genomes]
rs28675909	0.89[ASN][1000 genomes]
rs325	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs328	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3735964	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6586884	0.98[ASN][1000 genomes]
rs6983430	0.88[ASN][1000 genomes]
rs6999813	0.98[ASN][1000 genomes]
rs7004149	0.88[ASN][1000 genomes]
rs7004158	0.88[ASN][1000 genomes]
rs7007609	0.88[ASN][1000 genomes]
rs7007797	0.88[ASN][1000 genomes]
rs7016880	0.88[ASN][1000 genomes]
rs7819706	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7841189	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9644568	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890632	chr8:19816371-19853146	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

Variant related diseases (count:4)

Disease	PMID	Source
HDL cholesterol	21347282	GWAS catalog
Triglycerides	20139978	GWAS catalog
Metabolic traits	19060910	GWAS catalog
Triglycerides	19060911	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10096633	ENTPD4	cis	parietal	SCAN
rs10096633	DOK2	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19820600-19833400	Weak transcription	Psoas Muscle	Psoas
2	chr8:19828400-19832000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:19828800-19831600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:19830800-19831000	Enhancers	Adipose Nuclei	Adipose

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