Variant report

Variant	rs10097076
Chromosome Location	chr8:11500503-11500504
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11490989..11493930-chr8:11499186..11501140,2	K562	blood:
2	chr8:11472906..11474859-chr8:11497875..11500697,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GATA4-1	chr8:11500307-11501029	NONHSAT125069

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10088181	1.00[EUR][1000 genomes]
rs10091294	1.00[EUR][1000 genomes]
rs10094355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10094630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096015	1.00[EUR][1000 genomes]
rs10096526	1.00[EUR][1000 genomes]
rs10100742	1.00[EUR][1000 genomes]
rs10101788	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10101900	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10102714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10103483	1.00[EUR][1000 genomes]
rs10105409	1.00[EUR][1000 genomes]
rs10106250	1.00[EUR][1000 genomes]
rs10108287	1.00[EUR][1000 genomes]
rs10109678	1.00[EUR][1000 genomes]
rs10109971	1.00[EUR][1000 genomes]
rs10111542	1.00[EUR][1000 genomes]
rs10112464	1.00[EUR][1000 genomes]
rs10113255	1.00[EUR][1000 genomes]
rs10216815	1.00[EUR][1000 genomes]
rs2127130	1.00[EUR][1000 genomes]
rs2127131	1.00[EUR][1000 genomes]
rs2244775	1.00[EUR][1000 genomes]
rs2252818	1.00[EUR][1000 genomes]
rs2252906	1.00[EUR][1000 genomes]
rs2252908	1.00[EUR][1000 genomes]
rs2252914	1.00[EUR][1000 genomes]
rs2264307	1.00[EUR][1000 genomes]
rs2409812	1.00[EUR][1000 genomes]
rs28394863	1.00[EUR][1000 genomes]
rs28472428	1.00[EUR][1000 genomes]
rs28505660	1.00[EUR][1000 genomes]
rs28665608	1.00[EUR][1000 genomes]
rs4841582	1.00[EUR][1000 genomes]
rs5027656	1.00[EUR][1000 genomes]
rs55951800	1.00[EUR][1000 genomes]
rs57782848	1.00[EUR][1000 genomes]
rs58467083	1.00[EUR][1000 genomes]
rs59035560	1.00[EUR][1000 genomes]
rs60419043	1.00[EUR][1000 genomes]
rs61265429	1.00[EUR][1000 genomes]
rs73533953	1.00[EUR][1000 genomes]
rs73545766	1.00[EUR][1000 genomes]
rs73663183	1.00[EUR][1000 genomes]
rs73663184	1.00[EUR][1000 genomes]
rs73663185	1.00[EUR][1000 genomes]
rs73663187	1.00[EUR][1000 genomes]
rs73663190	1.00[EUR][1000 genomes]
rs73663191	1.00[EUR][1000 genomes]
rs73663201	1.00[EUR][1000 genomes]
rs7831152	1.00[EUR][1000 genomes]
rs7841968	1.00[EUR][1000 genomes]
rs8191510	1.00[EUR][1000 genomes]
rs8191543	1.00[EUR][1000 genomes]
rs8191573	1.00[EUR][1000 genomes]
rs8191669	1.00[EUR][1000 genomes]
rs8191682	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11498200-11500600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:11498400-11500600	Bivalent Enhancer	Fetal Stomach	stomach
3	chr8:11498400-11500600	Enhancers	Stomach Mucosa	stomach
4	chr8:11498400-11502400	Enhancers	Pancreas	Pancrea
5	chr8:11498600-11500600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr8:11498600-11500800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:11498600-11500800	Enhancers	Fetal Intestine Small	intestine
8	chr8:11499200-11500600	Enhancers	Liver	Liver
9	chr8:11499200-11500600	Enhancers	Left Ventricle	heart
10	chr8:11499200-11500800	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr8:11499400-11501600	Weak transcription	Gastric	stomach
12	chr8:11499600-11500600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr8:11499600-11500600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:11499600-11500600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:11499600-11500600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:11499600-11500600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:11499600-11500600	Enhancers	HMEC	breast
18	chr8:11499800-11500600	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr8:11499800-11500600	Active TSS	H9 Cell Line	embryonic stem cell
20	chr8:11499800-11500600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
21	chr8:11499800-11500600	Active TSS	Rectal Smooth Muscle	rectum
22	chr8:11499800-11500800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:11499800-11500800	Active TSS	Brain Germinal Matrix	brain
24	chr8:11499800-11501400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr8:11499800-11501400	Bivalent Enhancer	Fetal Lung	lung
26	chr8:11500000-11500600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:11500000-11500600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr8:11500000-11500600	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr8:11500000-11500600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
30	chr8:11500000-11500600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
31	chr8:11500000-11500800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr8:11500000-11500800	Enhancers	Duodenum Mucosa	Duodenum
33	chr8:11500000-11501200	Enhancers	HSMMtube	muscle
34	chr8:11500000-11502600	Enhancers	Primary B cells from cord blood	blood
35	chr8:11500000-11502800	Enhancers	Primary B cells from peripheral blood	blood
36	chr8:11500200-11500600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:11500200-11500600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr8:11500200-11500600	Bivalent Enhancer	Fetal Brain Male	brain
39	chr8:11500200-11500800	Bivalent Enhancer	Fetal Intestine Large	intestine
40	chr8:11500400-11500600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:11500400-11500600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
42	chr8:11500400-11500600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr8:11500400-11500600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
44	chr8:11500400-11500600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:11500400-11500600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:11500400-11500600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:11500400-11500600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:11500400-11500600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:11500400-11500600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr8:11500400-11500600	Bivalent/Poised TSS	Brain Angular Gyrus	brain

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