Variant report

Variant	rs10109678
Chromosome Location	chr8:11588404-11588405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:11587892..11588820-chr8:11603814..11604865,11	MCF-7	breast:
2	chr8:11587880..11588754-chr8:26059609..26060454,2	MCF-7	breast:
3	chr8:11297376..11298167-chr8:11588230..11588817,3	MCF-7	breast:
4	chr8:11570409..11571041-chr8:11587922..11588483,3	MCF-7	breast:
5	chr8:11432773..11433729-chr8:11587844..11588900,10	MCF-7	breast:
6	chr8:11432740..11433872-chr8:11587844..11588900,23	MCF-7	breast:
7	chr8:11587913..11588721-chr8:11635440..11636177,4	MCF-7	breast:
8	chr8:11488454..11489748-chr8:11587903..11588890,4	MCF-7	breast:
9	chr8:11362531..11363443-chr8:11587841..11588799,2	MCF-7	breast:
10	chr8:11488454..11489748-chr8:11587903..11588890,8	MCF-7	breast:
11	chr8:11587850..11588855-chr8:11603787..11604777,28	MCF-7	breast:
12	chr8:11587278..11590197-chr8:11605996..11608000,2	MCF-7	breast:
13	chr8:11587887..11588889-chr8:11603840..11604789,8	MCF-7	breast:
14	chr8:11462808..11463594-chr8:11587916..11588873,3	MCF-7	breast:
15	chr8:11528163..11528738-chr8:11587874..11588807,3	MCF-7	breast:
16	chr8:11576572..11577288-chr8:11587875..11588770,5	MCF-7	breast:
17	chr8:11570475..11571255-chr8:11587947..11588507,3	MCF-7	breast:
18	chr8:11587952..11589513-chr8:11592423..11595406,2	K562	blood:
19	chr8:11430122..11430693-chr8:11587796..11588653,2	MCF-7	breast:
20	chr8:11432809..11433827-chr8:11587933..11588820,9	MCF-7	breast:
21	chr8:11576250..11577120-chr8:11588183..11588784,3	MCF-7	breast:
22	chr8:11446527..11447418-chr8:11587991..11588812,3	MCF-7	breast:
23	chr8:11428917..11429796-chr8:11587902..11588451,3	MCF-7	breast:
24	chr8:11587881..11588495-chr8:17186901..17187476,2	MCF-7	breast:
25	chr8:11576614..11577288-chr8:11587891..11588770,3	MCF-7	breast:
26	chr8:11587913..11588513-chr8:11635440..11636177,3	MCF-7	breast:
27	chr8:11528163..11528723-chr8:11588032..11588807,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170983	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10088181	1.00[EUR][1000 genomes]
rs10091294	1.00[EUR][1000 genomes]
rs10094355	1.00[EUR][1000 genomes]
rs10094630	1.00[EUR][1000 genomes]
rs10096015	1.00[EUR][1000 genomes]
rs10096526	1.00[EUR][1000 genomes]
rs10097076	1.00[EUR][1000 genomes]
rs10100742	1.00[EUR][1000 genomes]
rs10101788	1.00[EUR][1000 genomes]
rs10101900	1.00[EUR][1000 genomes]
rs10102714	1.00[EUR][1000 genomes]
rs10103483	1.00[EUR][1000 genomes]
rs10105409	1.00[EUR][1000 genomes]
rs10106250	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10108287	1.00[EUR][1000 genomes]
rs10109971	1.00[EUR][1000 genomes]
rs10111542	1.00[EUR][1000 genomes]
rs10112464	1.00[EUR][1000 genomes]
rs10113255	1.00[EUR][1000 genomes]
rs10216815	1.00[EUR][1000 genomes]
rs2127130	1.00[EUR][1000 genomes]
rs2127131	1.00[EUR][1000 genomes]
rs2244775	1.00[EUR][1000 genomes]
rs2252818	1.00[EUR][1000 genomes]
rs2252906	1.00[EUR][1000 genomes]
rs2252908	1.00[EUR][1000 genomes]
rs2252914	1.00[EUR][1000 genomes]
rs2264307	1.00[EUR][1000 genomes]
rs2409812	1.00[EUR][1000 genomes]
rs28394863	1.00[EUR][1000 genomes]
rs28472428	1.00[EUR][1000 genomes]
rs28505660	1.00[EUR][1000 genomes]
rs28665608	1.00[EUR][1000 genomes]
rs4841582	1.00[EUR][1000 genomes]
rs5027656	1.00[EUR][1000 genomes]
rs55951800	1.00[EUR][1000 genomes]
rs57782848	1.00[EUR][1000 genomes]
rs58467083	1.00[EUR][1000 genomes]
rs59035560	1.00[EUR][1000 genomes]
rs60419043	1.00[EUR][1000 genomes]
rs61265429	1.00[EUR][1000 genomes]
rs73533953	1.00[EUR][1000 genomes]
rs73545766	1.00[EUR][1000 genomes]
rs73545784	1.00[EUR][1000 genomes]
rs73663183	1.00[EUR][1000 genomes]
rs73663184	1.00[EUR][1000 genomes]
rs73663185	1.00[EUR][1000 genomes]
rs73663187	1.00[EUR][1000 genomes]
rs73663190	1.00[EUR][1000 genomes]
rs73663191	1.00[EUR][1000 genomes]
rs73663201	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7831152	1.00[EUR][1000 genomes]
rs7841968	1.00[EUR][1000 genomes]
rs8191510	1.00[EUR][1000 genomes]
rs8191543	1.00[EUR][1000 genomes]
rs8191573	1.00[EUR][1000 genomes]
rs8191669	1.00[EUR][1000 genomes]
rs8191682	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1028229	chr8:11575762-11805961	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv539475	chr8:11575762-11805961	Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv428514	chr8:11580381-11765706	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11582600-11589000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:11583200-11590600	Enhancers	Ovary	ovary
3	chr8:11585000-11591000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:11585600-11592400	Enhancers	Liver	Liver
5	chr8:11587200-11588800	Enhancers	Pancreas	Pancrea
6	chr8:11587200-11592400	Enhancers	Left Ventricle	heart
7	chr8:11587400-11591600	Enhancers	Right Atrium	heart
8	chr8:11587600-11589200	Genic enhancers	Fetal Intestine Small	intestine
9	chr8:11587600-11589600	Enhancers	Right Ventricle	heart
10	chr8:11588000-11591400	Enhancers	Fetal Heart	heart
11	chr8:11588200-11590000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:11588400-11588600	Enhancers	Gastric	stomach
13	chr8:11588400-11588600	Bivalent Enhancer	Lung	lung
14	chr8:11588400-11590200	Weak transcription	Stomach Mucosa	stomach
15	chr8:11588400-11593200	Weak transcription	HepG2	liver

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