Variant report

Variant	rs10097080
Chromosome Location	chr8:95391574-95391575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10089098	1.00[AMR][1000 genomes]
rs10090947	1.00[AFR][1000 genomes]
rs10094296	1.00[AMR][1000 genomes]
rs10098298	0.81[AMR][1000 genomes]
rs10099076	1.00[AMR][1000 genomes]
rs10104637	1.00[AMR][1000 genomes]
rs10104756	1.00[AMR][1000 genomes]
rs10107320	1.00[AMR][1000 genomes]
rs10110995	1.00[AMR][1000 genomes]
rs10111789	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10111845	1.00[AMR][1000 genomes]
rs10111959	1.00[AMR][1000 genomes]
rs12334675	1.00[AMR][1000 genomes]
rs13439301	1.00[AMR][1000 genomes]
rs28397775	1.00[AMR][1000 genomes]
rs28425652	1.00[AMR][1000 genomes]
rs28435991	1.00[AMR][1000 genomes]
rs28465569	1.00[AMR][1000 genomes]
rs28605692	1.00[AMR][1000 genomes]
rs28651529	1.00[AMR][1000 genomes]
rs28897138	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3136421	0.81[AMR][1000 genomes]
rs7823715	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv1031480	chr8:95375696-95447407	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95365800-95417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:95372000-95414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:95373800-95391600	Weak transcription	Fetal Lung	lung
4	chr8:95374600-95392200	Weak transcription	Fetal Intestine Large	intestine
5	chr8:95377800-95412000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:95378200-95403200	Weak transcription	Brain Angular Gyrus	brain
7	chr8:95378200-95417200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:95379200-95403600	Weak transcription	Brain Anterior Caudate	brain
9	chr8:95379400-95407000	Weak transcription	Fetal Stomach	stomach
10	chr8:95379400-95413200	Weak transcription	Fetal Brain Male	brain
11	chr8:95380200-95409400	Weak transcription	HSMMtube	muscle
12	chr8:95380800-95392000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:95381000-95393000	Weak transcription	Primary B cells from cord blood	blood
14	chr8:95382400-95414800	Weak transcription	Gastric	stomach
15	chr8:95383000-95392000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:95383200-95403600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:95384200-95413600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:95385800-95403000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:95386000-95397800	Weak transcription	HMEC	breast
20	chr8:95386000-95405600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:95386000-95413400	Weak transcription	NHLF	lung
22	chr8:95386000-95421400	Weak transcription	Psoas Muscle	Psoas
23	chr8:95386000-95429200	Weak transcription	NHDF-Ad	bronchial
24	chr8:95386200-95391600	Weak transcription	Osteobl	bone
25	chr8:95386400-95407400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:95386400-95412000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:95386600-95418400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr8:95387200-95418000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:95387600-95394000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:95387800-95391600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:95387800-95393800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr8:95387800-95393800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr8:95387800-95410800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:95389200-95392000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr8:95389200-95392600	Strong transcription	A549	lung
36	chr8:95389200-95393200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:95389200-95393400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr8:95389200-95393400	Strong transcription	Dnd41	blood
39	chr8:95389200-95393600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr8:95389200-95415600	Weak transcription	Adipose Nuclei	Adipose
41	chr8:95389200-95417800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:95389600-95409200	Weak transcription	Right Ventricle	heart
43	chr8:95389600-95409400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:95389800-95397600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:95389800-95413000	Weak transcription	Placenta	Placenta
46	chr8:95390200-95404800	Weak transcription	Small Intestine	intestine
47	chr8:95390400-95392200	Strong transcription	H9 Cell Line	embryonic stem cell
48	chr8:95390400-95392400	Strong transcription	Primary T cells from cord blood	blood
49	chr8:95390400-95392400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:95390400-95392400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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