Variant report

Variant	rs10098244
Chromosome Location	chr8:131415835-131415836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131415572..131417392-chr8:131454478..131456515,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10103052	0.82[EUR][1000 genomes]
rs2395992	0.80[EUR][1000 genomes]
rs2670881	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs2670882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs2670886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs2670887	0.82[EUR][1000 genomes]
rs2791339	0.86[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2994295	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs2994296	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs4498576	0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
2	chr8:131395600-131434200	Weak transcription	Hela-S3	cervix
3	chr8:131398800-131417000	Weak transcription	Esophagus	oesophagus
4	chr8:131399400-131419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:131401600-131421800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:131402600-131418000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:131405600-131422800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:131405600-131423600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:131406800-131417000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:131407400-131419600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:131407800-131416800	Weak transcription	HepG2	liver
12	chr8:131407800-131417000	Weak transcription	Lung	lung
13	chr8:131407800-131419400	Weak transcription	Spleen	Spleen
14	chr8:131408000-131422200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:131409000-131416800	Weak transcription	Fetal Kidney	kidney
16	chr8:131409200-131416800	Weak transcription	NH-A	brain
17	chr8:131409200-131422400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:131409200-131424000	Weak transcription	Right Ventricle	heart
19	chr8:131409200-131426400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:131409200-131431800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:131409400-131416200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:131409400-131416600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:131409400-131421800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:131409600-131428400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:131409800-131417000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:131410000-131416600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:131410000-131423200	Weak transcription	Adipose Nuclei	Adipose
28	chr8:131410000-131423200	Weak transcription	Ovary	ovary
29	chr8:131411200-131420400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:131411400-131416600	Weak transcription	HMEC	breast
31	chr8:131411400-131418400	Weak transcription	Fetal Lung	lung
32	chr8:131411400-131419400	Weak transcription	Left Ventricle	heart
33	chr8:131411600-131416000	Weak transcription	NHLF	lung
34	chr8:131411600-131416600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr8:131411800-131416400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:131412600-131417600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr8:131414000-131416400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr8:131414000-131417000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:131414000-131417600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr8:131414200-131416200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:131414200-131416400	Weak transcription	Fetal Stomach	stomach
42	chr8:131414200-131416400	Weak transcription	Osteobl	bone
43	chr8:131414400-131416000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:131414400-131416600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:131414400-131416800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr8:131414400-131416800	Weak transcription	NHEK	skin
47	chr8:131414400-131417400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr8:131414400-131431400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr8:131414600-131416600	Weak transcription	HUVEC	blood vessel
50	chr8:131414600-131416600	Weak transcription	NHDF-Ad	bronchial

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