Variant report

Variant	rs2670882
Chromosome Location	chr8:131337836-131337837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:131325774..131327833-chr8:131336321..131339218,2	K562	blood:
2	chr8:131335598..131338253-chr8:131338429..131341406,2	MCF-7	breast:
3	chr8:131336690..131338851-chr8:131341065..131343497,2	K562	blood:
4	chr8:131328562..131331530-chr8:131335260..131337875,2	K562	blood:
5	chr8:131335044..131338190-chr8:131340619..131343497,3	K562	blood:
6	chr8:131318340..131321278-chr8:131336360..131338722,2	MCF-7	breast:
7	chr8:131196822..131199241-chr8:131335887..131338128,2	K562	blood:
8	chr8:131336874..131339691-chr8:131343974..131346537,3	K562	blood:

No data

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10098244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs10103052	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13267150	0.85[EUR][1000 genomes]
rs13276034	0.88[EUR][1000 genomes]
rs1340019	0.87[ASN][1000 genomes]
rs16893265	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs16904256	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2395992	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2670876	1.00[JPT][hapmap]
rs2670881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2670886	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2670887	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2791339	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2791346	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2791354	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs28413707	0.86[EUR][1000 genomes]
rs28736405	0.81[EUR][1000 genomes]
rs28857237	0.87[EUR][1000 genomes]
rs2994295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2994296	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2994298	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3924350	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4498576	0.85[JPT][hapmap]
rs4733570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6991855	0.82[YRI][hapmap]
rs72722357	0.85[EUR][1000 genomes]
rs7813167	0.85[TSI][hapmap]
rs7825499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7828689	0.82[YRI][hapmap]
rs7828842	0.82[YRI][hapmap]
rs7838372	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9694314	1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv870148	chr8:131206342-131373989	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2670882	EPB41L2	trans	lymphoblastoid	seeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131315600-131342000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:131315600-131353400	Weak transcription	Dnd41	blood
3	chr8:131322000-131338200	Weak transcription	Esophagus	oesophagus
4	chr8:131323400-131345600	Weak transcription	Fetal Intestine Small	intestine
5	chr8:131324800-131344600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:131326800-131347800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:131327000-131345600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:131330200-131353400	Weak transcription	Aorta	Aorta
9	chr8:131330800-131338400	Weak transcription	Placenta	Placenta
10	chr8:131331000-131342400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:131331200-131340400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:131331800-131339600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:131331800-131340000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:131332000-131338400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr8:131332000-131338600	Weak transcription	Primary B cells from cord blood	blood
16	chr8:131332000-131340800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:131332600-131341200	Weak transcription	Fetal Stomach	stomach
18	chr8:131332600-131341400	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr8:131332600-131342600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:131332600-131344800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:131332800-131339200	Weak transcription	Lung	lung
22	chr8:131332800-131339400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr8:131332800-131339800	Weak transcription	GM12878-XiMat	blood
24	chr8:131333000-131339200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:131333200-131339600	Enhancers	Brain Anterior Caudate	brain
26	chr8:131333200-131344200	Enhancers	NHDF-Ad	bronchial
27	chr8:131333400-131343000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:131333600-131338200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr8:131333600-131338400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr8:131333800-131338400	Weak transcription	Ovary	ovary
31	chr8:131333800-131339200	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr8:131334000-131338400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:131334200-131338400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:131334600-131339800	Enhancers	Fetal Thymus	thymus
35	chr8:131334800-131339400	Enhancers	Stomach Smooth Muscle	stomach
36	chr8:131334800-131346600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr8:131335000-131338000	Enhancers	K562	blood
38	chr8:131335000-131338400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:131335000-131338800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:131335000-131339000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr8:131335200-131339800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr8:131335200-131339800	Enhancers	Osteobl	bone
43	chr8:131335200-131347400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:131335400-131338400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr8:131335400-131338400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:131335400-131338400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr8:131335400-131339800	Enhancers	NHLF	lung
48	chr8:131335400-131344200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr8:131335600-131338200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr8:131335600-131338400	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links