Variant report

Variant	rs7813167
Chromosome Location	chr8:131377219-131377220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:131371033..131372653-chr8:131376514..131378216,2	MCF-7	breast:
2	chr8:131370636..131372390-chr8:131374796..131377434,2	K562	blood:
3	chr8:131370791..131374454-chr8:131375102..131378755,4	MCF-7	breast:
4	chr8:131334993..131336619-chr8:131375130..131377384,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM49B-8	chr8:131376783-131377961	ucscGeneNc_uc003ytc_1

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2670882	0.85[TSI][hapmap]
rs2670886	0.81[TSI][hapmap]
rs6470810	0.86[CHD][hapmap]
rs7825499	0.85[TSI][hapmap]
rs7838372	0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1799913	chr8:131370231-131377219	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1803345	chr8:131370231-131377219	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv612290	chr8:131370231-131381098	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131371400-131382000	Weak transcription	Lung	lung
2	chr8:131371400-131391400	Weak transcription	Spleen	Spleen
3	chr8:131371600-131378600	Weak transcription	Psoas Muscle	Psoas
4	chr8:131371600-131383800	Weak transcription	Ovary	ovary
5	chr8:131371600-131386800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:131371600-131389800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:131371600-131419800	Weak transcription	Aorta	Aorta
8	chr8:131371800-131382800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:131371800-131384400	Weak transcription	Brain Germinal Matrix	brain
10	chr8:131371800-131389800	Weak transcription	Fetal Stomach	stomach
11	chr8:131371800-131390800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:131371800-131396400	Weak transcription	HepG2	liver
13	chr8:131371800-131398400	Weak transcription	Fetal Lung	lung
14	chr8:131373800-131382000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:131373800-131382400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:131373800-131387400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:131373800-131389600	Weak transcription	Placenta	Placenta
18	chr8:131374600-131378000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:131374600-131378400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:131374600-131382000	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:131374600-131384200	Weak transcription	Fetal Brain Male	brain
22	chr8:131374600-131390600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:131374600-131409000	Weak transcription	Fetal Brain Female	brain
24	chr8:131374800-131379800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:131375000-131378400	Weak transcription	HSMMtube	muscle
26	chr8:131376000-131377600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr8:131376000-131377600	Enhancers	NHLF	lung
28	chr8:131376000-131377800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr8:131376000-131378200	Enhancers	HMEC	breast
30	chr8:131376000-131379800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:131376400-131378800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr8:131376400-131378800	Enhancers	Hela-S3	cervix
33	chr8:131376400-131379000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:131376400-131379000	Enhancers	A549	lung
35	chr8:131376400-131379200	Enhancers	NHDF-Ad	bronchial
36	chr8:131376400-131381200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:131376400-131381200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:131376600-131377400	Enhancers	H1 Cell Line	embryonic stem cell
39	chr8:131376600-131377400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr8:131376600-131377400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:131376600-131377400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr8:131376600-131377400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:131376600-131377600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:131376600-131377600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:131376600-131377600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:131376600-131377600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr8:131376600-131377600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr8:131376600-131377600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:131376600-131377600	Enhancers	HSMM	muscle
50	chr8:131376600-131377800	Enhancers	Placenta Amnion	Placenta Amnion

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