Variant report

Variant	rs10098499
Chromosome Location	chr8:108458582-108458583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10096335	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1157411	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1433168	0.84[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs55638121	0.92[ASN][1000 genomes]
rs951759	0.90[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv524618	chr8:108456805-108458582	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108450400-108469600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:108450400-108469800	Weak transcription	Psoas Muscle	Psoas
3	chr8:108452400-108459400	Weak transcription	Ovary	ovary
4	chr8:108452400-108467200	Weak transcription	Fetal Lung	lung
5	chr8:108452400-108468000	Weak transcription	Aorta	Aorta
6	chr8:108452800-108459800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:108456800-108459000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:108456800-108459400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:108456800-108459600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:108456800-108462400	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:108457000-108461200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:108457400-108459600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:108457400-108461000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:108457400-108461200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:108457400-108467200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:108457600-108459600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:108457600-108460000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:108457600-108460400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:108457600-108463800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:108457600-108466400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:108457800-108460000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:108457800-108461000	Weak transcription	Osteobl	bone
23	chr8:108458000-108462400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:108458000-108462600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr8:108458400-108459800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:108458400-108462600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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