Variant report

Variant	rs10098522
Chromosome Location	chr8:35094585-35094586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10086587	0.93[AMR][1000 genomes]
rs10087911	1.00[AMR][1000 genomes]
rs10096892	0.81[AMR][1000 genomes]
rs10107594	0.93[AMR][1000 genomes]
rs10110672	1.00[AMR][1000 genomes]
rs12375317	0.81[AMR][1000 genomes]
rs28398307	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28485846	0.93[AMR][1000 genomes]
rs28670094	0.81[AMR][1000 genomes]
rs28677918	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28889116	0.96[AFR][1000 genomes]
rs61524572	1.00[AMR][1000 genomes]
rs6997107	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7005219	0.93[AMR][1000 genomes]
rs7010735	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35092200-35094800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr8:35092200-35094800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr8:35092400-35094800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr8:35092400-35095000	Active TSS	Brain Anterior Caudate	brain
5	chr8:35092400-35095200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr8:35092400-35095200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:35092400-35095200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
8	chr8:35092400-35095600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr8:35092400-35095600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr8:35092400-35096200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr8:35092600-35095000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:35092600-35095200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr8:35092600-35095200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:35092600-35095400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:35092800-35095000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:35092800-35095200	Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr8:35093000-35094600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
18	chr8:35093200-35094600	Bivalent Enhancer	Fetal Lung	lung
19	chr8:35093400-35094600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
20	chr8:35093400-35094600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
21	chr8:35093600-35094600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
22	chr8:35093600-35094600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
23	chr8:35093600-35094800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr8:35093600-35094800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr8:35093600-35094800	Active TSS	Fetal Brain Male	brain
26	chr8:35093800-35095000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr8:35094000-35094600	Bivalent/Poised TSS	Fetal Stomach	stomach
28	chr8:35094000-35095200	Active TSS	Fetal Brain Female	brain
29	chr8:35094000-35095600	Active TSS	Brain Angular Gyrus	brain
30	chr8:35094000-35095600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:35094000-35096800	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr8:35094200-35094600	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:35094200-35094600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:35094200-35094600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr8:35094200-35094600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:35094200-35094600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:35094200-35094600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
38	chr8:35094200-35094800	Bivalent/Poised TSS	Fetal Kidney	kidney
39	chr8:35094400-35094600	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:35094400-35094600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr8:35094400-35094600	Flanking Bivalent TSS/Enh	Fetal Heart	heart
42	chr8:35094400-35096000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain

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