Variant report

Variant	rs10096892
Chromosome Location	chr8:35148943-35148944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10086587	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10087911	0.81[AMR][1000 genomes]
rs10089315	0.87[AMR][1000 genomes]
rs10089567	0.87[AMR][1000 genomes]
rs10091590	0.87[AMR][1000 genomes]
rs10093692	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10098522	0.81[AMR][1000 genomes]
rs10102264	0.87[AMR][1000 genomes]
rs10105217	0.87[AMR][1000 genomes]
rs10107594	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10110672	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10110925	0.87[AMR][1000 genomes]
rs10113663	0.87[AMR][1000 genomes]
rs10216982	0.87[AMR][1000 genomes]
rs10216988	0.87[AMR][1000 genomes]
rs10283094	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10954988	0.87[AMR][1000 genomes]
rs12156011	0.87[AMR][1000 genomes]
rs12334296	0.82[AMR][1000 genomes]
rs12334297	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12334907	0.87[AMR][1000 genomes]
rs12335097	0.87[AMR][1000 genomes]
rs12335216	0.87[AMR][1000 genomes]
rs12335292	0.87[AMR][1000 genomes]
rs12375317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439296	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28394156	0.87[AMR][1000 genomes]
rs28398307	0.81[AMR][1000 genomes]
rs28428555	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28483932	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28485846	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28491300	0.87[AMR][1000 genomes]
rs28493480	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28523755	0.87[AMR][1000 genomes]
rs28545269	0.87[AMR][1000 genomes]
rs28599667	0.87[AMR][1000 genomes]
rs28670094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28676524	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28677918	0.81[AMR][1000 genomes]
rs28735693	0.87[AMR][1000 genomes]
rs28758351	0.87[AMR][1000 genomes]
rs57666020	0.87[AMR][1000 genomes]
rs60406840	0.87[AMR][1000 genomes]
rs61048855	0.87[AMR][1000 genomes]
rs61524572	0.81[AMR][1000 genomes]
rs62503921	0.83[AMR][1000 genomes]
rs6991051	0.87[AMR][1000 genomes]
rs6993456	0.87[AMR][1000 genomes]
rs6997107	0.81[AMR][1000 genomes]
rs7005219	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7010735	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838554	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7843698	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9297238	0.87[AMR][1000 genomes]
rs9297239	0.87[AMR][1000 genomes]
rs9649890	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9987174	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35124600-35151200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:35139800-35151200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:35144400-35151000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:35144600-35150800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:35144600-35151000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:35144600-35155400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:35144600-35156800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:35144800-35151000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:35144800-35151600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:35144800-35158400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:35146600-35160800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:35147000-35149000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:35148400-35149800	Enhancers	Cortex derived primary cultured neurospheres	brain

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