Variant report

Variant	rs28599667
Chromosome Location	chr8:35234656-35234657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10089315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10089567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10091590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096892	0.87[AMR][1000 genomes]
rs10102264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105890	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109298	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10216982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10216988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10283094	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10954988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334296	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12375317	0.87[AMR][1000 genomes]
rs13439296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069323	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28394156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28428555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28491300	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28545269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28567831	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28670094	0.87[AMR][1000 genomes]
rs28676524	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28735693	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28758351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57666020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60406840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61048855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468315	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6991051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6993456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010735	0.87[AMR][1000 genomes]
rs7826476	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843698	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9649890	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9987174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1830629	chr8:35218820-35256073	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35229000-35242000	Weak transcription	Fetal Brain Female	brain
2	chr8:35231000-35236400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr8:35231800-35236200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:35233600-35236000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr8:35233600-35236200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr8:35233600-35236600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:35233800-35235000	Enhancers	NH-A	brain
8	chr8:35233800-35235600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:35234000-35234800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr8:35234000-35236200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:35234000-35236200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:35234200-35234800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr8:35234200-35234800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:35234200-35234800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:35234200-35235000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:35234200-35235200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:35234200-35236000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:35234400-35234800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:35234400-35235400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr8:35234400-35235400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr8:35234600-35234800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr8:35234600-35234800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:35234600-35235000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:35234600-35235200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:35234600-35235600	Enhancers	Fetal Heart	heart
26	chr8:35234600-35235600	Enhancers	Fetal Kidney	kidney
27	chr8:35234600-35236000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:35234600-35236000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr8:35234600-35237200	Enhancers	H9 Cell Line	embryonic stem cell

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