Variant report

Variant	rs28493480
Chromosome Location	chr8:35208740-35208741
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10089315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10089567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10091590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093692	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096892	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10102264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105890	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109298	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110925	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10216982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10216988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10283094	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10954988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334296	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334297	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12335292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12375317	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13439296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069323	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28394156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28428555	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483932	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28491300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523755	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28545269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28567831	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28599667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28670094	0.87[AMR][1000 genomes]
rs28676524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28735693	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28758351	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57666020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60406840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61048855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6468315	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6991051	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6993456	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010735	0.87[AMR][1000 genomes]
rs7826476	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838554	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843698	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9649890	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9987174	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv890717	chr8:35184361-35315188	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35203600-35212800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:35208200-35208800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:35208200-35208800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:35208200-35209200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:35208400-35208800	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links