Variant report

Variant	rs10098792
Chromosome Location	chr8:59044039-59044040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59041929..59045530-chr8:59049327..59051439,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16923091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923100	0.81[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
2	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
3	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
4	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
5	chr8:59022400-59050000	Weak transcription	Ovary	ovary
6	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:59032000-59047200	Weak transcription	Liver	Liver
10	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:59033200-59045800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:59033800-59044800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr8:59033800-59046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
15	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
16	chr8:59035800-59044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:59036000-59044600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:59037200-59049200	Weak transcription	Brain Substantia Nigra	brain
19	chr8:59040800-59045200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr8:59041000-59044800	Weak transcription	Psoas Muscle	Psoas
21	chr8:59041200-59044400	Enhancers	HMEC	breast
22	chr8:59041400-59044200	Enhancers	NHEK	skin
23	chr8:59041400-59044400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:59041400-59048200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:59041800-59058000	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:59042000-59044800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr8:59042000-59045000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:59042200-59044600	Enhancers	Gastric	stomach
29	chr8:59042200-59050200	Weak transcription	Lung	lung
30	chr8:59042400-59044800	Strong transcription	Fetal Muscle Leg	muscle
31	chr8:59042800-59044600	Enhancers	HepG2	liver
32	chr8:59043200-59044800	Weak transcription	Right Ventricle	heart
33	chr8:59043200-59046400	Strong transcription	Fetal Stomach	stomach
34	chr8:59043200-59046600	Weak transcription	Fetal Heart	heart
35	chr8:59043200-59049000	Weak transcription	NHLF	lung
36	chr8:59043400-59045200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
37	chr8:59043600-59044400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr8:59043600-59044800	Weak transcription	Left Ventricle	heart
39	chr8:59043600-59045000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:59043600-59046000	Weak transcription	Right Atrium	heart
41	chr8:59043600-59049000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:59043600-59049000	Weak transcription	Osteobl	bone
43	chr8:59043600-59052600	Weak transcription	Esophagus	oesophagus
44	chr8:59043800-59044400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr8:59043800-59044600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:59044000-59044800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr8:59044000-59048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:59044000-59048800	Weak transcription	HSMM	muscle
49	chr8:59044000-59048800	Weak transcription	NHDF-Ad	bronchial
50	chr8:59044000-59049400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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