Variant report

Variant	rs16923100
Chromosome Location	chr8:59045950-59045951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10098792	0.81[CHB][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs16923069	0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16923091	0.81[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs4237024	1.00[ASW][hapmap]
rs57447674	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57833498	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
2	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
3	chr8:59022400-59050000	Weak transcription	Ovary	ovary
4	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:59032000-59047200	Weak transcription	Liver	Liver
8	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:59033800-59046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
11	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
12	chr8:59037200-59049200	Weak transcription	Brain Substantia Nigra	brain
13	chr8:59041400-59048200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:59041800-59058000	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:59042200-59050200	Weak transcription	Lung	lung
16	chr8:59043200-59046400	Strong transcription	Fetal Stomach	stomach
17	chr8:59043200-59046600	Weak transcription	Fetal Heart	heart
18	chr8:59043200-59049000	Weak transcription	NHLF	lung
19	chr8:59043600-59046000	Weak transcription	Right Atrium	heart
20	chr8:59043600-59049000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:59043600-59049000	Weak transcription	Osteobl	bone
22	chr8:59043600-59052600	Weak transcription	Esophagus	oesophagus
23	chr8:59044000-59048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:59044000-59048800	Weak transcription	HSMM	muscle
25	chr8:59044000-59048800	Weak transcription	NHDF-Ad	bronchial
26	chr8:59044000-59049400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:59044000-59049600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:59044000-59050200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr8:59044000-59052600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:59044000-59058000	Weak transcription	HSMMtube	muscle
31	chr8:59044400-59053400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:59044600-59046000	Weak transcription	Gastric	stomach
33	chr8:59044600-59048800	Weak transcription	HepG2	liver
34	chr8:59044600-59049200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:59044800-59046200	Genic enhancers	Fetal Muscle Leg	muscle
36	chr8:59044800-59046400	Enhancers	Right Ventricle	heart
37	chr8:59045000-59046600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr8:59045000-59048200	Weak transcription	Fetal Lung	lung
39	chr8:59045000-59049400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:59045000-59053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:59045000-59058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr8:59045200-59046000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:59045200-59050600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr8:59045200-59058000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:59045400-59046000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:59045400-59046400	Enhancers	Fetal Muscle Trunk	muscle
47	chr8:59045800-59046200	Enhancers	Stomach Smooth Muscle	stomach
48	chr8:59045800-59046400	Enhancers	Left Ventricle	heart
49	chr8:59045800-59046400	Enhancers	Psoas Muscle	Psoas
50	chr8:59045800-59046400	Enhancers	Spleen	Spleen

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