Variant report

Variant	rs10099640
Chromosome Location	chr8:104178381-104178382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104178160..104180826-chr8:104197477..104199748,2	K562	blood:
2	chr8:104162104..104164227-chr8:104176288..104178946,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf56-1	chr8:104178053-104178524	ENSG00000247081
2	lnc-C8orf56-1	chr8:104178157-104178524	ENSG00000247081
3	lnc-C8orf56-1	chr8:104177737-104178524	ENSG00000247081
4	lnc-C8orf56-1	chr8:104177737-104178524	NONHSAT128160
5	lnc-C8orf56-1	chr8:104178053-104178524	NR_109954

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11777754	0.88[CEU][hapmap];0.84[GIH][hapmap]
rs13439041	0.82[MEX][hapmap]
rs1389690	1.00[AFR][1000 genomes]
rs1494282	1.00[AFR][1000 genomes]
rs2201369	0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104166200-104179800	Weak transcription	Spleen	Spleen
2	chr8:104166600-104178800	Weak transcription	Fetal Brain Male	brain
3	chr8:104175200-104178800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:104176000-104179800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:104176600-104178800	Enhancers	Brain Anterior Caudate	brain
6	chr8:104176600-104179200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:104176800-104178400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:104176800-104178400	Enhancers	Brain Hippocampus Middle	brain
9	chr8:104177000-104178400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:104177000-104178400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:104177000-104178400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:104177000-104178400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:104177000-104178600	Enhancers	Brain Substantia Nigra	brain
14	chr8:104177000-104179600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:104177200-104178800	Enhancers	Brain Cingulate Gyrus	brain
16	chr8:104177400-104178400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:104177400-104179800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:104177600-104178600	Enhancers	Brain Angular Gyrus	brain
19	chr8:104177600-104178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:104177600-104186600	Weak transcription	Aorta	Aorta
21	chr8:104178000-104178400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:104178000-104179000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:104178000-104179200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:104178000-104179200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr8:104178200-104178400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:104178200-104178800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:104178200-104178800	Enhancers	Left Ventricle	heart
28	chr8:104178200-104181000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:104178200-104181400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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