Variant report

Variant	rs10100732
Chromosome Location	chr8:103780586-103780587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103780400..103784390-chr8:103818096..103820509,3	MCF-7	breast:
2	chr8:102214210..102215949-chr8:103780084..103781772,2	K562	blood:
3	chr8:103780128..103782222-chr8:103783334..103787112,5	MCF-7	breast:
4	chr8:103778765..103784253-chr8:103785133..103788553,5	MCF-7	breast:
5	chr8:103779903..103782646-chr8:103802643..103805318,2	MCF-7	breast:
6	chr8:103662477..103667937-chr8:103778259..103783622,7	MCF-7	breast:
7	chr8:103775757..103778292-chr8:103778774..103781669,2	K562	blood:
8	chr8:103774355..103775966-chr8:103779629..103782231,2	K562	blood:
9	chr8:103664561..103669175-chr8:103777642..103782938,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28608974	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62524039	0.85[EUR][1000 genomes]
rs62524041	0.97[ASN][1000 genomes]
rs7009612	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs72685182	0.97[ASN][1000 genomes]
rs72685183	0.95[ASN][1000 genomes]
rs7841186	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv520922	chr8:103778809-103780586	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv519814	chr8:103778809-103806914	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103776600-103790600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:103778600-103781600	Enhancers	Fetal Muscle Leg	muscle
3	chr8:103778800-103782600	Enhancers	Fetal Muscle Trunk	muscle
4	chr8:103778800-103783800	Enhancers	Fetal Thymus	thymus
5	chr8:103779000-103782600	Enhancers	Placenta	Placenta
6	chr8:103779000-103783600	Enhancers	Right Atrium	heart
7	chr8:103779000-103783800	Enhancers	Aorta	Aorta
8	chr8:103779200-103780600	Enhancers	Rectal Smooth Muscle	rectum
9	chr8:103779200-103781000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr8:103779200-103781200	Enhancers	Fetal Stomach	stomach
11	chr8:103779200-103782600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:103779200-103783000	Enhancers	Left Ventricle	heart
13	chr8:103779200-103783000	Enhancers	Lung	lung
14	chr8:103779200-103783400	Enhancers	Right Ventricle	heart
15	chr8:103779200-103783600	Enhancers	Pancreas	Pancrea
16	chr8:103779200-103783800	Enhancers	HMEC	breast
17	chr8:103779400-103780600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr8:103779400-103781400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:103779400-103781400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr8:103779400-103782800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:103779400-103783000	Enhancers	Primary hematopoietic stem cells	blood
22	chr8:103779400-103783600	Enhancers	Adipose Nuclei	Adipose
23	chr8:103779400-103784000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr8:103779600-103780600	Enhancers	Duodenum Mucosa	Duodenum
25	chr8:103779600-103780600	Enhancers	Gastric	stomach
26	chr8:103779600-103780600	Enhancers	Thymus	Thymus
27	chr8:103779600-103781000	Enhancers	Fetal Intestine Small	intestine
28	chr8:103779600-103781000	Enhancers	Fetal Lung	lung
29	chr8:103779600-103781000	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr8:103779600-103781200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:103779600-103781200	Enhancers	Esophagus	oesophagus
32	chr8:103779600-103781400	Enhancers	Stomach Mucosa	stomach
33	chr8:103779600-103781600	Enhancers	Primary B cells from cord blood	blood
34	chr8:103779600-103782600	Enhancers	Spleen	Spleen
35	chr8:103779600-103783000	Enhancers	Psoas Muscle	Psoas
36	chr8:103779600-103783600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:103779600-103783800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:103779600-103783800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:103779800-103780600	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr8:103779800-103780800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr8:103779800-103780800	Enhancers	Fetal Intestine Large	intestine
42	chr8:103779800-103781000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:103779800-103781000	Enhancers	NHLF	lung
44	chr8:103779800-103781600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:103779800-103782000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr8:103779800-103783800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:103779800-103783800	Enhancers	NHEK	skin
48	chr8:103780000-103780600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr8:103780000-103780600	Enhancers	Brain Anterior Caudate	brain
50	chr8:103780000-103780800	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links