Variant report

Variant	rs62524039
Chromosome Location	chr8:103777199-103777200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103775757..103778292-chr8:103778774..103781669,2	K562	blood:
2	chr8:103775938..103779802-chr8:103800388..103802850,3	MCF-7	breast:
3	chr8:103760932..103779637-chr8:103816413..103823932,43	MCF-7	breast:
4	chr8:103768328..103770834-chr8:103776432..103779286,2	K562	blood:
5	chr8:103774344..103777315-chr8:103815443..103817769,2	K562	blood:
6	chr8:103767561..103771444-chr8:103771777..103777513,6	MCF-7	breast:
7	chr8:103612111..103614488-chr8:103776554..103778954,2	MCF-7	breast:
8	chr8:103751112..103752616-chr8:103777186..103780062,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10100732	0.85[EUR][1000 genomes]
rs28608974	0.86[EUR][1000 genomes]
rs7841186	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103767200-103779000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:103772400-103780200	Weak transcription	A549	lung
3	chr8:103774200-103779600	Weak transcription	Psoas Muscle	Psoas
4	chr8:103774400-103779200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:103774600-103779000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:103774600-103779200	Weak transcription	Lung	lung
7	chr8:103774600-103779200	Weak transcription	Pancreas	Pancrea
8	chr8:103774600-103779600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:103774800-103780000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:103775000-103777200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:103775000-103778000	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:103775000-103779000	Weak transcription	Aorta	Aorta
13	chr8:103775000-103779000	Weak transcription	Right Atrium	heart
14	chr8:103775000-103779600	Weak transcription	Fetal Lung	lung
15	chr8:103775000-103780000	Weak transcription	Brain Anterior Caudate	brain
16	chr8:103776200-103777200	Enhancers	Osteobl	bone
17	chr8:103776200-103777600	Enhancers	Adipose Nuclei	Adipose
18	chr8:103776600-103777400	Enhancers	Primary T cells from cord blood	blood
19	chr8:103776600-103777600	Enhancers	NHEK	skin
20	chr8:103776600-103790600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:103776800-103777200	Enhancers	Rectal Smooth Muscle	rectum
22	chr8:103776800-103777600	Enhancers	Fetal Thymus	thymus
23	chr8:103776800-103777600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr8:103776800-103779600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:103777000-103777600	Enhancers	Colon Smooth Muscle	Colon
26	chr8:103777000-103779600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:103777000-103780000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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