Variant report

Variant	rs10101723
Chromosome Location	chr8:124629525-124629526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124576084..124576694-chr8:124628788..124629698,2	MCF-7	breast:
2	chr8:124618052..124619899-chr8:124628853..124631405,2	MCF-7	breast:
3	chr4:99390936..99391440-chr8:124628837..124629769,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11786123	1.00[ASN][1000 genomes]
rs11786342	1.00[ASN][1000 genomes]
rs16898653	1.00[ASN][1000 genomes]
rs28522167	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28587740	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28609787	1.00[ASN][1000 genomes]
rs28859105	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59332090	1.00[ASN][1000 genomes]
rs62518566	1.00[ASN][1000 genomes]
rs73335895	1.00[ASN][1000 genomes]
rs73337515	1.00[ASN][1000 genomes]
rs7821932	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826158	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838242	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124610400-124630000	Weak transcription	Right Atrium	heart
2	chr8:124619200-124629800	Weak transcription	Ovary	ovary
3	chr8:124624000-124635200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:124625200-124634800	Weak transcription	Placenta	Placenta
5	chr8:124626000-124630400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:124626000-124631000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:124626000-124632000	Weak transcription	NHEK	skin
8	chr8:124626600-124631000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:124626600-124633200	Enhancers	Fetal Heart	heart
10	chr8:124626800-124632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:124627400-124632600	Enhancers	HSMM	muscle
12	chr8:124627400-124633000	Enhancers	HSMMtube	muscle
13	chr8:124628200-124632600	Enhancers	Fetal Muscle Leg	muscle
14	chr8:124628400-124629600	Enhancers	K562	blood
15	chr8:124628400-124630200	Enhancers	NH-A	brain
16	chr8:124628400-124632600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:124628400-124633000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:124628400-124633800	Enhancers	Osteobl	bone
19	chr8:124628600-124630000	Weak transcription	Psoas Muscle	Psoas
20	chr8:124628600-124632800	Enhancers	Fetal Stomach	stomach
21	chr8:124628800-124630000	Weak transcription	Right Ventricle	heart
22	chr8:124628800-124630200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:124628800-124630200	Enhancers	HMEC	breast
24	chr8:124629000-124629600	Enhancers	Stomach Smooth Muscle	stomach
25	chr8:124629000-124630000	Weak transcription	Left Ventricle	heart
26	chr8:124629000-124630200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:124629000-124630200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:124629000-124630400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:124629000-124630400	Enhancers	Rectal Smooth Muscle	rectum
30	chr8:124629000-124630400	Enhancers	NHLF	lung
31	chr8:124629000-124630800	Enhancers	Fetal Lung	lung
32	chr8:124629200-124629600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr8:124629200-124629800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr8:124629200-124630400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr8:124629200-124631000	Weak transcription	NHDF-Ad	bronchial
36	chr8:124629200-124633000	Enhancers	Colon Smooth Muscle	Colon
37	chr8:124629200-124645400	Weak transcription	Aorta	Aorta
38	chr8:124629400-124629600	Enhancers	Brain Hippocampus Middle	brain
39	chr8:124629400-124631200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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