Variant report

Variant	rs16898653
Chromosome Location	chr8:124646612-124646613
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10088524	1.00[JPT][hapmap]
rs10101723	1.00[ASN][1000 genomes]
rs11786123	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786342	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16898473	1.00[JPT][hapmap]
rs17338685	1.00[JPT][hapmap]
rs28522167	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587740	1.00[ASN][1000 genomes]
rs28609787	1.00[ASN][1000 genomes]
rs28859105	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59332090	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518566	1.00[ASN][1000 genomes]
rs7017648	1.00[JPT][hapmap]
rs73335895	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337515	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821932	1.00[ASN][1000 genomes]
rs7826158	1.00[ASN][1000 genomes]
rs7838242	1.00[ASN][1000 genomes]
rs7838470	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124640200-124647800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124642000-124651800	Weak transcription	Right Ventricle	heart
3	chr8:124642400-124646800	Enhancers	NH-A	brain
4	chr8:124643200-124651800	Weak transcription	Psoas Muscle	Psoas
5	chr8:124643800-124650800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:124645000-124647200	Weak transcription	K562	blood
7	chr8:124645000-124647600	Weak transcription	Left Ventricle	heart
8	chr8:124645000-124651800	Weak transcription	Fetal Heart	heart
9	chr8:124645600-124647400	Weak transcription	Right Atrium	heart
10	chr8:124645600-124649200	Weak transcription	Hela-S3	cervix
11	chr8:124645800-124649200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:124646000-124647200	Weak transcription	NHDF-Ad	bronchial
13	chr8:124646000-124651800	Weak transcription	Aorta	Aorta
14	chr8:124646000-124655800	Weak transcription	Osteobl	bone
15	chr8:124646200-124647400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:124646400-124647400	Weak transcription	HMEC	breast
17	chr8:124646400-124649200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:124646600-124647600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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