Variant report

Variant	rs10102534
Chromosome Location	chr8:102608670-102608671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102607349..102609385-chr8:102616212..102618619,2	MCF-7	breast:
2	chr8:102607733..102610045-chr8:102616611..102619932,3	MCF-7	breast:
3	chr8:102589864..102591664-chr8:102607587..102610544,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10100945	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10105717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867973	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868083	0.90[EUR][1000 genomes]
rs17477457	0.94[EUR][1000 genomes]
rs1966249	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28498061	0.90[EUR][1000 genomes]
rs28657596	0.90[EUR][1000 genomes]
rs28712643	0.89[EUR][1000 genomes]
rs4507732	0.92[EUR][1000 genomes]
rs6980991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981506	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6999402	0.96[EUR][1000 genomes]
rs7829364	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:102592000-102611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:102594000-102611600	Weak transcription	Fetal Intestine Large	intestine
6	chr8:102594200-102612000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:102596000-102615000	Weak transcription	Stomach Mucosa	stomach
8	chr8:102597400-102616000	Weak transcription	Gastric	stomach
9	chr8:102597400-102620600	Weak transcription	Colonic Mucosa	Colon
10	chr8:102599000-102611600	Weak transcription	Pancreas	Pancrea
11	chr8:102600600-102619200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:102601400-102612200	Weak transcription	Fetal Stomach	stomach
13	chr8:102601600-102611600	Weak transcription	Fetal Intestine Small	intestine
14	chr8:102601600-102616200	Weak transcription	Fetal Kidney	kidney
15	chr8:102602400-102611200	Weak transcription	HMEC	breast
16	chr8:102602800-102611600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:102604000-102612000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:102604000-102614600	Weak transcription	Fetal Lung	lung
19	chr8:102604200-102612000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr8:102606800-102609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:102607000-102609000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr8:102607000-102609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:102607000-102611000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:102607000-102611400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:102607000-102611400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:102607000-102611400	Weak transcription	Placenta	Placenta
27	chr8:102607000-102611600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:102607000-102611600	Weak transcription	Esophagus	oesophagus
29	chr8:102607000-102616600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:102607200-102611400	Weak transcription	NHEK	skin
31	chr8:102607400-102609000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:102607600-102609200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:102607600-102611000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:102607800-102617000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:102608600-102608800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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