Variant report

Variant	rs28498061
Chromosome Location	chr8:102625677-102625678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102618200..102620350-chr8:102623909..102626355,2	K562	blood:
2	chr8:102624611..102627024-chr8:102643155..102644680,2	MCF-7	breast:
3	chr8:102624784..102626996-chr8:102628052..102630610,2	MCF-7	breast:
4	chr8:102619314..102627249-chr8:102640943..102646440,7	MCF-7	breast:
5	chr8:102497120..102519676-chr8:102608888..102627613,87	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10100945	0.81[EUR][1000 genomes]
rs10102534	0.90[EUR][1000 genomes]
rs10105717	0.90[EUR][1000 genomes]
rs10505011	0.80[AMR][1000 genomes]
rs16867973	0.87[EUR][1000 genomes]
rs16868083	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17477457	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1966249	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28657596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712643	0.97[EUR][1000 genomes]
rs4507732	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980991	0.90[EUR][1000 genomes]
rs6981506	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6999402	0.90[EUR][1000 genomes]
rs7829364	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757285	chr8:102609474-102649681	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759635	chr8:102609474-102649681	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2761235	chr8:102613079-102646059	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2764126	chr8:102618059-102625712	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	esv13338	chr8:102619280-102626751	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3511009	chr8:102619876-102627874	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv8370	chr8:102620173-102626866	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv3511013	chr8:102620226-102627824	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv3511012	chr8:102620518-102627190	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv1798037	chr8:102620606-102625712	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv1830889	chr8:102620606-102625712	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	esv1839854	chr8:102620606-102625712	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv442525	chr8:102620606-102625712	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv2421697	chr8:102620606-102627912	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	esv3479694	chr8:102620795-102626911	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	esv3511010	chr8:102620829-102626906	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	esv3511007	chr8:102620832-102626906	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
18	esv3479692	chr8:102620846-102626883	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	esv3511006	chr8:102620851-102626838	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	esv3479693	chr8:102620860-102626848	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	esv3479691	chr8:102620864-102626835	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	esv3511011	chr8:102620882-102626845	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
23	esv3479695	chr8:102620947-102626792	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	esv3511014	chr8:102620947-102626792	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv611817	chr8:102622590-102627912	Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv611818	chr8:102623113-102627912	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:102616800-102643800	Weak transcription	Gastric	stomach
4	chr8:102617400-102625800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:102618000-102640800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:102619200-102631800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:102619600-102631800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:102619800-102656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:102620200-102627400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:102620600-102625800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:102620800-102637800	Weak transcription	HUVEC	blood vessel
12	chr8:102621200-102625800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:102621200-102635800	Weak transcription	Pancreas	Pancrea
14	chr8:102621400-102626800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr8:102621400-102627000	Weak transcription	Fetal Intestine Large	intestine
16	chr8:102621600-102626800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:102621600-102627000	Weak transcription	Stomach Mucosa	stomach
18	chr8:102621600-102627200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:102623400-102632000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:102623400-102635200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:102623800-102631600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:102623800-102631800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:102624000-102632200	Weak transcription	Placenta	Placenta
24	chr8:102624200-102635400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr8:102624400-102627000	Weak transcription	Fetal Intestine Small	intestine
26	chr8:102624600-102635200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:102624800-102632800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:102625000-102626000	Strong transcription	NHEK	skin
29	chr8:102625200-102632000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:102625400-102627000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:102625400-102630800	Weak transcription	Hela-S3	cervix
32	chr8:102625400-102632000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:102625400-102635400	Weak transcription	Esophagus	oesophagus
34	chr8:102625400-102635400	Weak transcription	HMEC	breast
35	chr8:102625600-102626600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links