Variant report

Variant	rs10103498
Chromosome Location	chr8:4189879-4189880
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10086105	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10091031	0.96[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10091134	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10094349	0.96[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10103842	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10103969	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10104209	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10104718	0.89[ASN][1000 genomes]
rs10105113	0.84[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap]
rs10105349	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs10107472	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10108270	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10108725	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10108980	0.94[ASN][1000 genomes]
rs10429391	0.84[CHB][hapmap]
rs10866968	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10866969	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11136730	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11136731	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12675938	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12679965	0.93[EUR][1000 genomes]
rs13268424	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1546356	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1847570	0.96[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs1866271	0.81[CHB][hapmap]
rs1875897	0.84[CHB][hapmap];0.88[CHD][hapmap];0.80[TSI][hapmap]
rs3947178	0.84[EUR][1000 genomes]
rs4875336	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs6558864	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6558865	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7000582	0.93[JPT][hapmap]
rs7009827	0.89[CHB][hapmap]
rs7010684	0.88[JPT][hapmap]
rs7015864	0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs9314526	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530531	chr8:3942575-4605088	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034771	chr8:3969767-4255716	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv889939	chr8:4033186-4718648	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1032488	chr8:4072826-4328057	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1019677	chr8:4095786-4328057	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1015485	chr8:4127704-4272847	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv34054	chr8:4165205-4450873	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv889946	chr8:4185227-4192206	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv438021	chr8:4185750-4196180	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4188200-4190000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:4188200-4190000	Enhancers	Brain Germinal Matrix	brain
3	chr8:4188400-4190000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:4188400-4190000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:4188400-4190000	Enhancers	Stomach Mucosa	stomach
6	chr8:4188600-4190000	Enhancers	Brain Anterior Caudate	brain
7	chr8:4188800-4190000	Enhancers	Brain Angular Gyrus	brain
8	chr8:4188800-4190000	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:4188800-4190200	Enhancers	Pancreas	Pancrea
10	chr8:4189400-4191400	Enhancers	Liver	Liver
11	chr8:4189600-4190000	Enhancers	Fetal Intestine Small	intestine
12	chr8:4189800-4190000	Enhancers	Gastric	stomach
13	chr8:4189800-4190000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr8:4189800-4190000	Enhancers	Small Intestine	intestine
15	chr8:4189800-4190200	Enhancers	Fetal Brain Male	brain
16	chr8:4189800-4194400	Weak transcription	Fetal Intestine Large	intestine
17	chr8:4189800-4195400	Weak transcription	Duodenum Mucosa	Duodenum

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